Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5004 ATGGAAGAAGAGGAGCAAGCTACATCCTCACCCTTCTGGCTCCAAAACTCCAGCTCCGGCCGCCGCCGCCTCCGCCGCTCATACTCCCTATTTGCCACCTCCGGCACCCTTCTCATATGCCTTGTGGTGATTGCACTCGCCTTCATCCTCGTCCTCATTCCCACACTGCAGTCCTTCACCTCCCACATTTTCAAACCTCAATCAGTGAAGAAGAGCTGGGATTCCCTCAACCTCATCCTTGTTCTCTTTGCAATCCTCTGTGGTTTTCTTAGCAGAAACAACACCGCCACAAACAACAATGAAACCCCACGTTCCTATGAAGATAATCAAAGCTTCTCTGACACAAAACCATGGTTTGAGGAGAACCCTGATCCAACCCCTTATTACAGGTTGAGAAGTTTCAATTCCTACCCTGATCTCCGGCAAGAATCTTCGTGGGGGAATGAACGGTGGCGATTTTCTGATGATACCCGTGTTAATGGCTACCGTGGATTGGACATGGACACTGCAAATAAGGAAGAAGAAGAAGAAAAAGAACAGAGCATAGAGAAACAGAGCACTGAAAAACAGAGCATTGAGAAACAGAGCATCATGAAACAAAGCATCAAGAACATTGAAGTGGACACTTTTGAAGCTATTAGCAATGTTGGAAGAAACAAGGAGAAAGCGATTGAGAAACCAAAACTGAAAGGATCTGAATCTGATACTGAAAAGTTGTTACAAGCTAGGGAGAAGAAGAAGAATAACAAAGCAAGTGCAACCAAAGAGTTGTTGGCATCTTTGAAGGGAAAGAAGAAGAAACAGAGAAGCAGAAGCGTTGAGAATTTTCAGAGCATGCTGAATTCTGATCAACCACCTTTTCCTCTGCCGTCACACCCTCCAACACCTCCGCCACTGCCATCTCCATCTTCAGATTTTCATAACCTGTTCTATTCAAAGAAGAGAAAGCATAAGAAGCTGATCTCTGCATCGCCGCCGCCACAGCCACCGCCACTACCACCGTCACGTCATTTATCTTCCAAGCTTGTATCCAAAACCAAACCTCTTCATCAGGGTGTGGTAAACAAGGAAGAGAGTTTCTTTGCCTTGGAGGAAAAAGTACTACTTACTGGAAATGAGTCACCTCTGAACTCAATACCTCCGCCGCCACCACCGCCTCCACCATTCAAAATGCCGGTGTGGAAGTTCAGGGTGCAGGGTGATTTTGTAAGGATAGATAGCATTAAGAGTAGTTTTCCAGATTCAGATGAAGGTGTGGACTCAGCAACCGGTGAAGATGGTGAAATTCAATTGTTCTATGCAAGTCCTGATGTTGATAGCAAAGCTGATAATTTCATTGAAAGGTTCAGAGCTGGTTTGAGGATAGAGAAGATGAATTCCACCAAGGAGAAGCAGGGGTTAGGGAAGTCCAATCTATGGCCCGGACTAAGTTGA 1434 0.4561 MEEEEQATSSPFWLQNSSSGRRRLRRSYSLFATSGTLLICLVVIALAFILVLIPTLQSFTSHIFKPQSVKKSWDSLNLILVLFAILCGFLSRNNTATNNNETPRSYEDNQSFSDTKPWFEENPDPTPYYRLRSFNSYPDLRQESSWGNERWRFSDDTRVNGYRGLDMDTANKEEEEEKEQSIEKQSTEKQSIEKQSIMKQSIKNIEVDTFEAISNVGRNKEKAIEKPKLKGSESDTEKLLQAREKKKNNKASATKELLASLKGKKKKQRSRSVENFQSMLNSDQPPFPLPSHPPTPPPLPSPSSDFHNLFYSKKRKHKKLISASPPPQPPPLPPSRHLSSKLVSKTKPLHQGVVNKEESFFALEEKVLLTGNESPLNSIPPPPPPPPPFKMPVWKFRVQGDFVRIDSIKSSFPDSDEGVDSATGEDGEIQLFYASPDVDSKADNFIERFRAGLRIEKMNSTKEKQGLGKSNLWPGLS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5004 477 MobiDBLite consensus disorder prediction 218 252 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 376 391 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 458 477 - -
Lja3g5004 477 Coils Coil 236 256 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 162 190 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 162 195 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 210 346 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 97 117 - -
Lja3g5004 477 PANTHER OS01G0584100 PROTEIN 241 472 - -
Lja3g5004 477 PANTHER OS01G0584100 PROTEIN 1 218 - -
Lja3g5004 477 PANTHER COTTON FIBER (DUF761) 241 472 - -
Lja3g5004 477 PANTHER COTTON FIBER (DUF761) 1 218 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 97 120 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 286 303 - -
Lja3g5004 477 MobiDBLite consensus disorder prediction 372 391 - -
Lja3g5004 477 Pfam Cotton fibre expressed protein 436 463 IPR008480 -
Lja3g5004 477 Coils Coil 165 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5004 Lja-Chr3 92151909 92153825 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5004 - - lja:Lj3g3v0336720.1 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5004 3 92151909 92153825 Lja3g1547 3 16869560 16871050 PCT