Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1547 ATGGAACAAGAGGATCCAATGCCACCCTTCTGGGTTACAGACACCGACCGCCGCCATCTCCGCCGCTCTTACTCTCTACTTCACACCTGCACCTCACTCTCCATACTCTTCCTCGTTCTCGCTCTCGTCTTCGCCCTCGTCGTGGTCCCCACCTTGCACTCCTTCGCTTCCAACATCTTCAGACCTCAGGCAGTGAAGCATGGCTGGGACTCACTCAACATCGTGCTCGTTCTCTTCGCCGTCGTTTGCGGCTTCCTCAATAGAAACGACAATAACGAGACGCGAACACCGCGTTCCGACGACCACCGCCAGCATGATGATCGGAGAAGCTATGAGATCCCTGAAACGCCGCCGCCGTGGTACGAGTACTCGCATCGACCGTTGAATAGGTTGAGGAGCTTCGGCTCTGACCCCGATCTCCGGCAACACTCGCAGTGGGTCGCTGCTGATGATAGGTTCCGGTTTTATGATGATACCCATCTTCTTCTTCGTCACCGGAGTTTGAGACCTGAGGCTGAAGAAGAACTGGTCGTCGAGAACGTGGCCACGGTTACTTCAGTGGAAGTTTCTGATTTGCCGCCGCAGCAGAAGGATCCTGTGCCGGAGCAACCGCCTCCGCCGTCTCGGTCTCCACCGCCTTCTCGGTCTCCGTCTCCGCCGCCGGTGACGCGAAGGAAAGCTGTTCGACGAAATGCCAAGCCAAGACATCAACCGGAGATGATCGAGACGCCGAAAAGTAATAATTCAGCTGCCGAGAATTCTCAACTGCCGCCGCCTCCTCCTCCGCCACCACCTCCGCCGCCACCTCCTCCACCACCGCAGCCGCTATCAGTGGCAAAGAAGAAGAAAAGAGGGATGGCAACGAAGGAGTTTTTGACATCGTTGAGGGGGAAGAAGAAGAAACAAAGACAGAGAAGCGTTGATAATTTTGAGAGCATTCTGAATTCTGAATCTGAGCTCTCTCCACAACCGCCACAGTCACCACCGCCTTCAGTTTTTAACAACCTGTTCTCTTCCCAGAAAAGCAAGCACAAAAAGCACTACCTTGTTACTCATCCTGTGGCAACTCAAAAACCATGGTTATCAAACAAGAGAGAGCATTCTTCTTATGGCTTGGAAGATAATAGGGTGATGAACACTGGTAATGAGTCACCCCTGATCCCTATACCTCCGCCGCCGCCCCCGCCTCCGTTCAAGTTGCCGGCGTGGAGGTTCCGGGTGCAGGGTGACTTTGTTAGGGTAGATAGCATTGGCAGTTCGCGGAGTGGTTCACCGGATTTGGATGAAGTTGTGGAGTCACCAACCAGTCAAGAAGAATCAAGCCAATCCAATAGTCCTTGTGCCCCAAATTCATTGTTCTGTCCCAGCCCTGATGTTGATACCAAAGCTCACAACTTTATTGAGAACTTTAGAGCCGGTTTGAGGATGGCGGAGATGAACTCCATGAAGGGAATAGGGAGGTCCAATCTAGGCCCTTCACCACTCCCTTAA 1491 0.5319 MEQEDPMPPFWVTDTDRRHLRRSYSLLHTCTSLSILFLVLALVFALVVVPTLHSFASNIFRPQAVKHGWDSLNIVLVLFAVVCGFLNRNDNNETRTPRSDDHRQHDDRRSYEIPETPPPWYEYSHRPLNRLRSFGSDPDLRQHSQWVAADDRFRFYDDTHLLLRHRSLRPEAEEELVVENVATVTSVEVSDLPPQQKDPVPEQPPPPSRSPPPSRSPSPPPVTRRKAVRRNAKPRHQPEMIETPKSNNSAAENSQLPPPPPPPPPPPPPPPPPQPLSVAKKKKRGMATKEFLTSLRGKKKKQRQRSVDNFESILNSESELSPQPPQSPPPSVFNNLFSSQKSKHKKHYLVTHPVATQKPWLSNKREHSSYGLEDNRVMNTGNESPLIPIPPPPPPPPFKLPAWRFRVQGDFVRVDSIGSSRSGSPDLDEVVESPTSQEESSQSNSPCAPNSLFCPSPDVDTKAHNFIENFRAGLRMAEMNSMKGIGRSNLGPSPLP* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1547 496 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 125 199 - -
Lja3g1547 496 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 268 493 - -
Lja3g1547 496 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 122 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 359 401 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 197 220 - -
Lja3g1547 496 PANTHER COTTON FIBER (DUF761) 268 493 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 90 120 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 283 297 - -
Lja3g1547 496 PANTHER COTTON FIBER (DUF761) 125 199 - -
Lja3g1547 496 PANTHER COTTON FIBER (DUF761) 1 122 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 385 401 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 415 455 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 93 113 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 254 277 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 187 345 - -
Lja3g1547 496 PRINTS Proline rich extensin signature 117 129 - -
Lja3g1547 496 PRINTS Proline rich extensin signature 257 282 - -
Lja3g1547 496 PRINTS Proline rich extensin signature 201 222 - -
Lja3g1547 496 MobiDBLite consensus disorder prediction 429 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1547 Lja-Chr3 16869560 16871050 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1547 - - ccaj:109802610 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1547 3 16869560 16871050 Lja3g1547 3 16869560 16871050 ECH
Lja3g5004 3 92151909 92153825 Lja3g1547 3 16869560 16871050 PCT