Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4794 ATGAAAATGAGGAGGACAAAGCTAAGTATTTTGTGGTGTGTATGGATTTTCCTTTGTGGATCTTGTGTGGCCAGATTTGTAGTGGAGAAAAACAATTTGAAAATCACTTCTCCGAAATCATTGAGAGGCATATATGAATGTGCCATTGGGAATTTTGGAGTTCCAAAGTATGGTGGAACCATGATTGGGACTGTGGTATTCCCAAAGTTGAATCAGAATGGATGCAGCAAATTTGATGGTACAGATGCCTTGAGTTCCAAGCCTGGAGGCTTCCCTGCCTTTGTTCTTGTTGATCGAGGAGATTGCTTCTTCACTTTAAAGGCATGGAATGCTCAGAACGGTGGAGCAGCAGCTATTCTTGTTGCAGATGATAGGATAGAGCCCTTGATCACCATGGACACTCCTGAAGAAGGGAATGGTGAAAAAGATGATGATTACATTGAAAAGATTAACATCCCTTCTGCTCTTATCAGCAAAGCACTAGGTGATAGCATCAAATCGGCTCTCTCTAATGGAGCAATGGTTAACGTAAATCTCGATTGGCGAGAGGCTCTTCCACACCCTGATGAGAGAGTAGAGTACGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAGAATGAGATCAACTTTGTGAAGAGTTTTAAGGGTGCAGCTCAACTGCTTGAGAAAAAGGGGTTCACTAAGTTCACCCCTCACTACATAACTTGGTATTGCCCAGAAGCATTTATCTTGAGCCAACAGTGCAAGTCTCAGTGCATAAACAATGGGAGGTACTGCTCGCCGGATCCTGAACAAGATTTCAGTAGAGGGTATGAGGGCAAAGATGTTGTTGTTCAAAATTTACGGCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAACCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATTCGTTGCCCGATGAGAGACAATAAGTACACTGAAGAATGCTCGGATCAAGTTATTAAATCACTTGCTGTTGATTTAAAGAAGATTAAAGACTGTATTGGGGATCCTCAAGCAGATGTTGACAATCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGAAAAGGCTCTCGTGGTGATGTTACTATATTACCCACTCTTGTTATGAACAACAGACAGTATAGAGGTAAGCTGTCAAAAGCAGCAGTCCTGAAGGCACTCTGTGCAAGTTTCCAAGAGACTACTGAGCCTTCCATTTGTTTAACTCCAGACATGGAAACAAACGAATGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTGCAAATATTACTGCTTGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTACAAAATGTGAAATTTGTGGGTGATGGATATACCCACTGTGAAGCTTCAGGAGCCTTGAGGTGTGCAATCAACAATGGAGGTTGTTGGAAAGGAGCCAGAGGTGGCAGGGCTTACTCTGCTTGTATTGATGACCACACAAACGGTTGCAAGTGTCCACCTGGATTCAGGGGTGATGGAGTCCACAACTGTGAAGATGTGGATGAGTGCAGAGAGAAATTGGCCTGCCAGTGCCCAGAGTGCAGCTGCAAAAATACCTGGGGGAGTTATGAATGCACATGCAGTAATGGTTTGTTCTACAATCGAGAAAATGACATTTGTATTGGCAAATATGCGGCTTCAGTGTCTAGCGGGGGCTTTGTTTGGATGGTTTTTATTATCTTGGCTATGGCTGGCGCTGGAGGGTATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCTGAAATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCTGAGAACTCCAATCTAGTTCACAATGATGTCTAG 1884 0.431 MKMRRTKLSILWCVWIFLCGSCVARFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGTVVFPKLNQNGCSKFDGTDALSSKPGGFPAFVLVDRGDCFFTLKAWNAQNGGAAAILVADDRIEPLITMDTPEEGNGEKDDDYIEKINIPSALISKALGDSIKSALSNGAMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCENEINFVKSFKGAAQLLEKKGFTKFTPHYITWYCPEAFILSQQCKSQCINNGRYCSPDPEQDFSRGYEGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMRDNKYTEECSDQVIKSLAVDLKKIKDCIGDPQADVDNPVLKAEQDAQIGKGSRGDVTILPTLVMNNRQYRGKLSKAAVLKALCASFQETTEPSICLTPDMETNECLENNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCAINNGGCWKGARGGRAYSACIDDHTNGCKCPPGFRGDGVHNCEDVDECREKLACQCPECSCKNTWGSYECTCSNGLFYNRENDICIGKYAASVSSGGFVWMVFIILAMAGAGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPENSNLVHNDV* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4794 627 Gene3D Laminin 412 457 - -
Lja3g4794 627 SMART egfca_6 518 560 IPR001881 GO:0005509
Lja3g4794 627 CDD EGF_CA 518 549 - -
Lja3g4794 627 Pfam PA domain 63 165 IPR003137 -
Lja3g4794 627 Gene3D Laminin 472 560 - -
Lja3g4794 627 SUPERFAMILY PA domain 94 174 IPR046450 -
Lja3g4794 627 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 606 - -
Lja3g4794 627 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 13 606 - -
Lja3g4794 627 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Lja3g4794 627 Gene3D - 23 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4794 Lja-Chr3 89978210 89983784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4794 7 627 Miscellaneous Gene Families AT3G52850 70.673 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4794 - - gmx:100815266 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3250 1 40101304 40107222 Lja3g4794 3 89978210 89983784 PCT