Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3250 ATGAAGATGAGCATAAAGTTGAGTTTCTTGTTGTTTGTTTGGGTTCTGCTATTGGGGAGTTGTTTGGGCAGGTTTGTGGTGGAGAAGAATAGCTTGAAGGTCACTTCTCCGAAATCTTTGAAGGGTTTATATGAATGTGCGATTGGGAATTTTGGGGTTCCTAAGTATGGAGGAACATTGATTGGTTCTGTTGTGTACCCAAATGTGAATCGGATGGGATGCAAGAACTTCACTGATTTCAATGCTTCGTTTCAGTCCAAGCCTGGAGTTTTCCCCACCTTTGTTCTTGTTGATCGTGGAGAATGCTACTTCACCTTGAAGGCGTGGAACTCACAAAATGCTGGAGCAGCAGCTATACTTGTAGCCGATGACAGGACAGAATCATTGATCACCATGGACACTCCTGAAGAAGGGCATATTGCAAATGACGATTATGTAGAGAAGATTAGCATTCCTTCTGCTCTTATCAGTAAATCCTTGGGGGATAGCATCAAGGAGACTCTCTCCAAGGAGGAGACAGTCTACGTAAATCTTGATTGGCGAGAGGCTCTTCCACATCCCGACGAGAGAGTTGAGTATGAATTGTGGACGAATAGCAATGATGAGTGTGGGCCAAAGTGTGACAATCAAATTAATTTCATGAAGAGCTTCAAAGGGGTAGCGCAGCTACTCGAACGGAAGGGGTTCGCTCAGTTTACCCCTCGCTATATAACTTGGTATTGCCCTGAAGAGTTTCGCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAACGGAAGATACTGTGCTCCAGACCCTGAGCAAGATTTCAGTAAAGGATATGATGGTAAAGATGTTGTCGTTCAAAACTTACGCCAAGCTTGCTTCTTCAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATCCGTTGCCCCATGAAAGAGAACAAATACACAGAAGAATGCTCTGATCAAGTTATTAAATCTCTCGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTAATGCAAATGTTGAAAACCCTGTTCTTAAGGCTGAACAGGAGGCACAGATTGGCAAAGGCTCTCGCGGTGATGTTACGATACTACCTACTCTTGTTATAAACAACAGACAGTATAGAGGTCAGCTGTCAAGACCATCAGTTCTCAAGGCAATCTGTGCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTCAAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAATATTACTGCATGCAGGGATACTTTCCGTGGAAGAGTGTGTGAATGCCCTATTGTGCAAAATGTGAAGTTTGTAGGTGATGGATATACTCACTGTGAAGCTTCAGGAGTCTTGAGCTGTGAAGTCCACAATGGAGGTTGTTGGACGGGAGCACAAGGTGGCAGGGTTTACTCTGCTTGTCATGATGACTACATAAAAGGTTGTGAGTGTCCAACTGGGTTCAGAGGTGATGGAGTCCGGTCATGTGAAGATATTGATGAGTGCAATGAGAAATTGGTTTGCCAGTGCCCGGAGTGCAAATGCAAAAATACCTGGGGGAGTTATGAATGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGACTTGTGTATTGCAGGTAAATATACTGCTTATACTGCTTCGGTGAGTATTTGGATGATTATCCTGGTTGTGGTTGTTGCTGCTTCTGGAGGATATGCGTTTTACAAGTATAGAATCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCTCAGAACCCTAGTCAAGTGCATTACGATATCTAG 1881 0.4327 MKMSIKLSFLLFVWVLLLGSCLGRFVVEKNSLKVTSPKSLKGLYECAIGNFGVPKYGGTLIGSVVYPNVNRMGCKNFTDFNASFQSKPGVFPTFVLVDRGECYFTLKAWNSQNAGAAAILVADDRTESLITMDTPEEGHIANDDYVEKISIPSALISKSLGDSIKETLSKEETVYVNLDWREALPHPDERVEYELWTNSNDECGPKCDNQINFMKSFKGVAQLLERKGFAQFTPRYITWYCPEEFRLSKQCKSQCINNGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMKENKYTEECSDQVIKSLGVDLKKIKDCVGDPNANVENPVLKAEQEAQIGKGSRGDVTILPTLVINNRQYRGQLSRPSVLKAICAGFQETTEPSICLTQDMETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGVLSCEVHNGGCWTGAQGGRVYSACHDDYIKGCECPTGFRGDGVRSCEDIDECNEKLVCQCPECKCKNTWGSYECKCGSGLFYSRENDLCIAGKYTAYTASVSIWMIILVVVVAASGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPQNPSQVHYDI* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3250 626 Gene3D - 23 187 - -
Lja1g3250 626 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 605 - -
Lja1g3250 626 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 605 - -
Lja1g3250 626 Pfam PA domain 62 164 IPR003137 -
Lja1g3250 626 SUPERFAMILY PA domain 57 171 IPR046450 -
Lja1g3250 626 Gene3D Laminin 410 456 - -
Lja1g3250 626 SMART egfca_6 517 559 IPR001881 GO:0005509
Lja1g3250 626 Gene3D Laminin 471 555 - -
Lja1g3250 626 ProSitePatterns Calcium-binding EGF-like domain signature. 517 543 IPR018097 GO:0005509
Lja1g3250 626 CDD EGF_CA 517 548 - -
Lja1g3250 626 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Lja1g3250 626 Gene3D Glutaredoxin 242 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3250 Lja-Chr1 40101304 40107222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3250 5 626 Miscellaneous Gene Families AT3G52850 70.673 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3250 - - gmx:100807514 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3250 1 40101304 40107222 Lja1g3250 1 40101304 40107222 ECH
Lja1g3250 1 40101304 40107222 Lja3g4794 3 89978210 89983784 PCT