Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4788 ATGGACTCAACACATGAACACAGTGAATATGAAGATTGGGAAAGCAATCATATGGAGAATTCCATCTTAAGTTATGGGAGTGAAATGGAGGCAGACGAATGGCAGATGGTGAAAACCAAGGGGAACCAATTTGTGGTGAATGACCAACCTTTCTATGTTAATGGATTCAATACTTACTGGTTAATGGTATTTGCTGCGGATAATTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACATGCAGCCTCAGTGGGTATGACAGTTTGCAGGACTTGGGCATTCAATGATGGCGAATGGAGAGCCCTTCAGAAATCCCCATCAGGTTATGATGAAGATGTATTCCAGGCCCTGGATTTTGTGGTAAGTGAAGCAAAGAAATACAAAATCAGACTCATATTATCATTGGTTAACAACTGGGAGGCATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCACTGCTGCTGGTCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGCTAAGACGGTCCTGAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGATCCATCAGGTGATAAGTTACAGGAGTGGATAAAAGAAATGGCATTCTTTGTGAAGAGTATTGATACAAAACACCTGGTGGAGATTGGACTAGAAGGATTTTATGGACCATCGACCCCTCAGAGATTTCAGGTCAACCCAAATTCATTTGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGAGTCGATTTCGCTTCTGTTCACATATATCCAGACTCCTGGATTTCACAATCAGTTGCCGATAACCATCTCCCATTTATAATGTCATGGATGGAAGCACATATAGAGGACGCTGAAGAGTATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAAGCCCTGGCTACAATTCAACATATAGAAACAACCTTATAAACACTGTGTACAAGACCATCCTAAACTCTACAAAAAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACAGATTACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCCCCTTCCACGTCAAGTATGATATCCCTTCAATCCACAAGGCTCGCCCTATTCAATTCCTTATGCTCTAAAACATGCCATTGGGGTTGTAAGAAGAAAAAGGTGTTGGAAAATATAAACTATCACGATGAACTCTGA 1308 0.419 MDSTHEHSEYEDWESNHMENSILSYGSEMEADEWQMVKTKGNQFVVNDQPFYVNGFNTYWLMVFAADNSTRGKVTEVFKHAASVGMTVCRTWAFNDGEWRALQKSPSGYDEDVFQALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGTAAGLNLTSDDDFFSHPTLRSYYKAHAKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDPSGDKLQEWIKEMAFFVKSIDTKHLVEIGLEGFYGPSTPQRFQVNPNSFAQQVGTDFIRNHQVLGVDFASVHIYPDSWISQSVADNHLPFIMSWMEAHIEDAEEYLGMPVVFAEFGVSAKSPGYNSTYRNNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSMISLQSTRLALFNSLCSKTCHWGCKKKKVLENINYHDEL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4788 435 Pfam Cellulase (glycosyl hydrolase family 5) 48 350 IPR001547 GO:0004553|GO:0071704
Lja3g4788 435 Gene3D Glycosidases 33 408 - -
Lja3g4788 435 PANTHER - 11 435 IPR045053 GO:0004553
Lja3g4788 435 SUPERFAMILY (Trans)glycosidases 36 395 IPR017853 -
Lja3g4788 435 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 11 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4788 Lja-Chr3 89896123 89899238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4788 32 435 Glycoside Hydrolase AT5G01930 73.153 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4788 K19355 - gmx:100801139 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3240 1 40007051 40009737 Lja3g4788 3 89896123 89899238 PCT