Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3240 ATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAACCAATTTGTGGTAAATGACCAACCTTTCTACATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAATCCACCAGAGGAAAGGTCACTGAAGTGTTCAAACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGTCATATTAGCATATGGTGGCAAAGCACAATACGTGAAATGGGGAAAAGATGCTGGTTTAGACTTGACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATGTTAAGACTGTGCTCAATAGAGTTAATACATTCACAAATATGACTTATACGGAAGACCCTAGAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATGCTCCTCAGATTCCACAGGTGATAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGCTAAAAAATTTGATCCAAAACACATGGTGGAGGTTGGATTGGAAGGGTTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCTCAACAGGTTGGGACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTCTTGGATTTCACCAGAGTCTTGGATGGAAGCTCACATAGAGGATGCTGAAAACTATCTTGGAATGCCTATTGTTTTTTCTGAGTTTGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGACACAGTAATCAGCACTGTGTACAGAACCATCCTAAACTCCACTAAGAAAGGAGGGAATGGAGCTGAAAGTCTTTTGTGGCAGGTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATACAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTGTGTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTATTGCACTTCAAAATGCCAATGGAGTTGTAAGAAGAAAAAGGTAGTGGAGAGAATACTGTATCATGATGAACTCTAA 1128 0.422 MEEDEWQMVQKKGNQFVVNDQPFYINGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKVILAYGGKAQYVKWGKDAGLDLTSDDDFFSHPTLRNYYKAHVKTVLNRVNTFTNMTYTEDPRIFAWELMNEPRCSSDSTGDKLQDWIQEMAFHAKKFDPKHMVEVGLEGFYGPSTPQRVQFNPNTYAQQVGTDFIRNHQVLGVDFASVHIYADSWISPESWMEAHIEDAENYLGMPIVFSEFGVSSKDSGYNSTYRDTVISTVYRTILNSTKKGGNGAESLLWQVFPDGTDNMDDGYTVVFSKSPSTSSIVSLQSTRLALFNSYCTSKCQWSCKKKKVVERILYHDEL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3240 375 Pfam Cellulase (glycosyl hydrolase family 5) 20 290 IPR001547 GO:0004553|GO:0071704
Lja1g3240 375 Gene3D Glycosidases 6 348 - -
Lja1g3240 375 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 88 - -
Lja1g3240 375 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 91 375 - -
Lja1g3240 375 PANTHER - 1 88 IPR045053 GO:0004553
Lja1g3240 375 PANTHER - 91 375 IPR045053 GO:0004553
Lja1g3240 375 SUPERFAMILY (Trans)glycosidases 8 330 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3240 Lja-Chr1 40007051 40009737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3240 3 375 Glycoside Hydrolase AT5G01930 65.111 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3240 K19355 - gmx:100805357 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3240 1 40007051 40009737 Lja1g3240 1 40007051 40009737 ECH
Lja1g3240 1 40007051 40009737 Lja3g4788 3 89896123 89899238 PCT