Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4777 ATGTCAGGTTTGTACAATCCCAACTTCTCACCTTCACCTGTGAGAGCTGCTGCAGCTTCTGCTCAGATTAGAGGCACCCCATCTTCAGAAATGGATAGTCAGTATCTGTCAGAGTTGCTGGCAGAGCGTCAAAAGCTTGGACCTTTCATGCAAGTGCTTCCTACATGCAATCGCCTCTTGAATCAAGAAATATTAAGAGTCTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTCCTTCGAACCTCATGTCTAATGTCCCTGGGACAGGATTGGGTGGATGGAATGGTCTTCAGCAGGAGAGATTATGTGGAACTCCTGGAATGACAATGGACTGGCAAGTTGCCCCTGCAAGTCCTACTTCATACACTGTTAGAAGGATATTACGCTTGGAAATTCCTGTTGATACATTCCCCAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCAACAACAGGTTGCAGGGTGTTTATTAGAGGAACAGGATCTATAAAGGATCCAGACAAGGAAGAGAAGTTAAGAGGAAAACCAGGCTATGAGCATCTCTATGAGCCGCTCCACATATTGATCGAGGCTGATTTACCTGCTAATATTGTTGACATCAGGCTTAGGCAGGCTCAGGAAATCATAGAAGAACTGCTCAAACCTGTCGATGAGTCACAGGACTATGTCAAGAAGCAGCAGTTGCGGGAATTAGCATTGCTGAATTCAAATTTAAGAGAAGAGAGTCCTGGGCCAAGTGGTAGTGTATCTCCATTTAATTCTGGTGGAATGAAAAGAGCAAAAACTGGCAGATGA 864 0.4468 MSGLYNPNFSPSPVRAAAASAQIRGTPSSEMDSQYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREESPGPSGSVSPFNSGGMKRAKTGR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4777 287 MobiDBLite consensus disorder prediction 258 287 - -
Lja3g4777 287 CDD SF1_like-KH 142 262 - -
Lja3g4777 287 PANTHER RNA-BINDING PROTEIN RELATED 2 287 IPR045071 -
Lja3g4777 287 Pfam KH domain 154 190 IPR004088 GO:0003723
Lja3g4777 287 MobiDBLite consensus disorder prediction 262 278 - -
Lja3g4777 287 Pfam Homodimerisation region of STAR domain protein 31 78 IPR032377 -
Lja3g4777 287 SMART kh_6 137 237 IPR004087 GO:0003676
Lja3g4777 287 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 287 - -
Lja3g4777 287 Gene3D K Homology domain, type 1 27 268 IPR036612 GO:0003723
Lja3g4777 287 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 144 262 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4777 Lja-Chr3 89827087 89833178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4777 K14945 - gmx:100797384 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3223 1 39817960 39824455 Lja3g4777 3 89827087 89833178 PCT