Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3223 ATGTCAGGCTTGTATAATCCCAACTATTCACCTGCTAGAGCAGCTTCTCCTCAGATTAGGAGCACCCCAGAAGACAGTCAGTACCTACAAGAGTTGCTGGCAGAGCATCAAAAGCTTGGACCCTTTACACAAGTGCTTCCCATATGCAACCGCCTGATAAATCAAGAAATATTAAGAGTTTCTAGAATGTTGTCCAACCAAGGTTTTGGTGACTTTGATAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACATCATGTCAAATGTCAGTGGGACAGGTTTGGGTGGATGGAATAGTCTTCAGCAGGAGAGATTTAGTGGACCCCCTGGAATGACAATGGACTGGCAAGGTGCCCCTGCAAGCCCTAGTTCATTTACTGTTAAGAGAATCTTGCGCCTGGAAATTCCAGTAGATACATACCCTAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTTTGAAACGGGTAGAAGCTACTACTGGTTGCCGTGTATATATTAGAGGAAAAGGATCCATAAAGGATCCTGACAAGGAAGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCTCTACACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTGGATGTAAGGCTCAGGCAGGCTCAGGAAATTATAGAAGAACTGCTCAAGCCCGTGGATGAGTCACAGGACTTTATCAAGAGGCAGCAGCTGCGCGAATTAGCTATGCTGAATTCAAATTTCAGAGAAGAGTCACCAGGGCCAAGTGGCAGTGTGTCCCCATTCAATTCTAGTGGAATGAAGCGTGCAAAACCGGGTCGCTAA 843 0.4508 MSGLYNPNYSPARAASPQIRSTPEDSQYLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLSNQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQERFSGPPGMTMDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKPGR* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3223 280 MobiDBLite consensus disorder prediction 255 271 - -
Lja1g3223 280 ProSiteProfiles Type-1 KH domain profile. 147 204 - -
Lja1g3223 280 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 280 - -
Lja1g3223 280 MobiDBLite consensus disorder prediction 253 280 - -
Lja1g3223 280 PANTHER RNA-BINDING PROTEIN RELATED 2 280 IPR045071 -
Lja1g3223 280 Gene3D K Homology domain, type 1 19 261 IPR036612 GO:0003723
Lja1g3223 280 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 255 IPR036612 GO:0003723
Lja1g3223 280 CDD SF1_like-KH 135 255 - -
Lja1g3223 280 Pfam Homodimerisation region of STAR domain protein 24 71 IPR032377 -
Lja1g3223 280 Pfam KH domain 147 183 IPR004088 GO:0003723
Lja1g3223 280 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g3223 280 SMART kh_6 130 230 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3223 Lja-Chr1 39817960 39824455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3223 K14945 - gmx:100816420 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3223 1 39817960 39824455 Lja1g3223 1 39817960 39824455 ECH
Lja1g3223 1 39817960 39824455 Lja3g4777 3 89827087 89833178 PCT