Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4603 ATGGCAACCATGAATCCTTTTGATTTGCTCGGTGATGATGCTGAGGACCCGTCGCAGTTGATTGTTGCTGAGCAGCAGAAGGCGGCTGCTGCTGCTGCGGCTGCTGCGGCGGCGCCCAAGAAGGGTCAGGAGCATGGGAAGGCCGGTCCGGCGGCTCAGCAGAACAAGCCGGCCCAGTTGCCTTCCAAGCCGCTTCCTCCCACTCAGGCTGTGAGGGAGTCCAAGAATGAAGCTTCTCGTGGCGGCCGTGGGGGTGGCCGAGGAGGTGGACGTGGATTTGGACGCGGTGGTCGTGGTGGAAGTGGCTTTGGCCGTGATTTTCCTAATGATGATAACTCATTTCCTTCCTCTGGAGCCCCCATTAATGAAGGTGCTTTTGAAGGAGATACTGGAAACCCCTCAGAAAGACGCGGTTATGGTGCTCCTCGGGCACCTTATCGCGGTGGCGGTGGTGGTGGTCGCCGTGGCGGTTTTAGCAACGGTGAAGCTGGTGAAGATGGACGCCCACGGAGAACATTTGAACGCCACAGTGGGACCGGACGAGGAGGTGGGTTCAAACGTGAAGGTGCTGGACGTGGTAACTGGGGAACACAGTCTGATGAAATTGCTCAGGTCACTGAGGAAGTGGTGAATGAAGCTGAAAAGAATGTGGGTGATGAGAAGCCTGCAGCTGAGGAACAAGAGGCAGCAGATGGAAACAAGGAAAGCCCTGTTAATGAAAATGAAGAAAAGGAGCCTGAGGATAAGGAGATGACACTGGAAGAATATGAGAAGGTGCTGGAAGAGAAAAGAAAAGCCCTGCAAGCACTCAAGACTGAAGTGAGAAAGGTGGATGCTAAGGAGTTTGAATCCATGCAGCCACTTTCCCACAAGAAAGACAATGATGAGATCTTTGCTAAATTGGGATCTGACAAGGATAAGCGCAGAGATGCTATTGAGAAGGAGAAATCAAAGAAGTCTGTCAGCATCAATGAGTTTTTGAAGCCTGCTGAAGGAGAGAGGTACTACAGCCCAGGTGGCCGCGGTCGTGGACGTGGCAGCCGTGGTGGTTCAAGAGGAGGTTTCAGTGGAAATGCAAGCAACCATGCAGCAGCTCCAGCAATTCAGGATCCATCTCACTTCCCAACCTTGGGTGGGAAGTGA 1143 0.5328 MATMNPFDLLGDDAEDPSQLIVAEQQKAAAAAAAAAAAPKKGQEHGKAGPAAQQNKPAQLPSKPLPPTQAVRESKNEASRGGRGGGRGGGRGFGRGGRGGSGFGRDFPNDDNSFPSSGAPINEGAFEGDTGNPSERRGYGAPRAPYRGGGGGGRRGGFSNGEAGEDGRPRRTFERHSGTGRGGGFKREGAGRGNWGTQSDEIAQVTEEVVNEAEKNVGDEKPAAEEQEAADGNKESPVNENEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEVRKVDAKEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEKEKSKKSVSINEFLKPAEGERYYSPGGRGRGRGSRGGSRGGFSGNASNHAAAPAIQDPSHFPTLGGK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4603 380 MobiDBLite consensus disorder prediction 212 252 - -
Lja3g4603 380 Gene3D - 167 281 - -
Lja3g4603 380 SMART HABP4_PAI_RBP1_2 169 278 IPR006861 -
Lja3g4603 380 Coils Coil 253 280 - -
Lja3g4603 380 Pfam Hyaluronan / mRNA binding family 169 276 IPR006861 -
Lja3g4603 380 Pfam Stm1 1 85 IPR019084 -
Lja3g4603 380 MobiDBLite consensus disorder prediction 284 322 - -
Lja3g4603 380 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 380 - -
Lja3g4603 380 MobiDBLite consensus disorder prediction 164 182 - -
Lja3g4603 380 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 380 IPR039764 GO:0003723
Lja3g4603 380 MobiDBLite consensus disorder prediction 27 252 - -
Lja3g4603 380 MobiDBLite consensus disorder prediction 284 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4603 Lja-Chr3 87881881 87886224 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4603 K13199 - gmx:100791259 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4603 3 87881881 87886224 Lja3g4603 3 87881881 87886224 ECH
Lja3g4603 3 87881881 87886224 Lja1g2927 1 35489584 35494170 PCT