Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2927 ATGGCGACCATGAACCCTTTTGATTTGTTGGGTGATGACGCTGAGGATCCTTCTCAGCTCATCGCTGCCGAACAGCTCAAGGCTGCGGCCGCGGCGGCGACTGCTCCTCCCAAGAAAGCGGCGGGGGCTCAGGACCAGGGCAAGCAGGCCAAACCGGCTCAGATGCCTTCCAAGCCACTTCCTCCTGCTCAGGCTGTGAGGGATGCCAGAAATGAACCATCACGAGGAGGCCGTGGAGGTGCAAGAGGTGCTGGTCGTGGATTTGGACGTGGTCGTGGTTTCAATCGTGACTTCTCCAATGATGAGAACTCATTCCCTGCCTCTGGAGCCCCTGATAATCTGGGTCCTTTTGAAGGTGATTCTGAGAAGGCTTCAGAAAGGCGTGGTTATGGTGCACCACGAGGTCCTTATCGTGGTGGTGGTGGTGGTCGACGTGGAGGCTTCAGCAATGGTGAAGCTGATGAAGAAGGACGACCTCGAAGAGCATTTGAACGCCACAGTGGAACTGGCCGAGGAAGTGGATTCAAACGTGAAGGCGCTGGACGTGGTAACTGGGGAACACAAAGTGATGAAATTGCTCAGGTGACTGATGAAGTGGCGAATGAAACTGAAAAAAATTTGAGCGATGAGAAGCCTGCTGTTGAAGATGTTGCTGATGGAAACAAGGAGAGTTCTGCCAATGAAAATGAAGAAAAAGAGCCTGAGGATAAGGAGATGACTCTGGAGGAATATGAAAAGGTGCTGGAAGAAAAAAGGAAGGCCTTGCAAGCTCAAAAGACTGAAGGGAGAAAGGTAGACATAAAAGAGTTCGAGTCCATGCAACCCTTATCCTGCAAGAAAGACAATAATGACATCTTCGCTAAATTGGGATCTGATAAGGATAAACGCAAAGAGGCTTTTGAGAAGGAAGAGAAGGCCAAGAAGTCTGTGAGCATCAATGAGTTTCTGAAGCCTGCTGAAGGGGAAACCTACTATCCCAGTGGACGCGGAAGGGGTCGTGGCCGTGGCTCACGAGGAGGAGGAGGAGGAAGTTTCCGTGGAAATGCTACCAGCAATGCACCTGCTCCATCCATTGAAGATCCTGGGCATTTCCCAACCTTAGGTGGCAAGTGA 1113 0.513 MATMNPFDLLGDDAEDPSQLIAAEQLKAAAAAATAPPKKAAGAQDQGKQAKPAQMPSKPLPPAQAVRDARNEPSRGGRGGARGAGRGFGRGRGFNRDFSNDENSFPASGAPDNLGPFEGDSEKASERRGYGAPRGPYRGGGGGRRGGFSNGEADEEGRPRRAFERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVEDVADGNKESSANENEEKEPEDKEMTLEEYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAEGETYYPSGRGRGRGRGSRGGGGGSFRGNATSNAPAPSIEDPGHFPTLGGK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2927 370 MobiDBLite consensus disorder prediction 285 311 - -
Lja1g2927 370 MobiDBLite consensus disorder prediction 27 239 - -
Lja1g2927 370 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 370 - -
Lja1g2927 370 MobiDBLite consensus disorder prediction 187 201 - -
Lja1g2927 370 SMART HABP4_PAI_RBP1_2 159 266 IPR006861 -
Lja1g2927 370 MobiDBLite consensus disorder prediction 272 370 - -
Lja1g2927 370 MobiDBLite consensus disorder prediction 149 172 - -
Lja1g2927 370 Pfam Stm1 1 80 IPR019084 -
Lja1g2927 370 Coils Coil 241 261 - -
Lja1g2927 370 MobiDBLite consensus disorder prediction 202 239 - -
Lja1g2927 370 Gene3D - 157 269 - -
Lja1g2927 370 Pfam Hyaluronan / mRNA binding family 159 265 IPR006861 -
Lja1g2927 370 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 370 IPR039764 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2927 Lja-Chr1 35489584 35494170 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2927 K13199 - gmx:100807657 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2927 1 35489584 35494170 Lja1g2927 1 35489584 35494170 ECH
Lja3g4603 3 87881881 87886224 Lja1g2927 1 35489584 35494170 PCT