Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4602 ATGAATCCCGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGAAAATCATGCCTTCTTCTGAGATTTGCTGATGATTCTTACATTGAAAGCTACATAAGCACCATCGGAGTTGATTTTAAAATTCGCACTGTTGAGCAGGATGCAAAGACCATTAAACTACAGATTTGGGATACTGCTGGGCAAGAGCGTTTTAGGACAATAACCAGTAGCTACTATCGTGGGGCTCATGGAATCATTATTGTTTATGACGTAACAGATGAAGAGAGCTTCAATAATGTAAAGCAATGGCTCAGTGAAATTGACCGCTATGCCAGTGATAATGTTAACAAACTTTTGGTTGGGAATAAGTGTGATCTGACAGCAAATAGAGCGGTCTCATATGATACAGCTAAAGAGTTTGCAGATCAAATTGGCATACCTTTTATGGAAACTAGTGCAAAAGATGCTACAAATGTAGAACAGGCATTCATGGCCATGTCTGCCTCCATCAAGAATAGAATGGCGAGCCAACCAAGCGCAAATAATGGAAGGCCTCCAACAGTGCAAATCAGAGGACAGCCAGTTGGGCAAAAAAGTGGGTGCTGCTCTTCCTAA 612 0.4134 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANNGRPPTVQIRGQPVGQKSGCCSS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4602 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Lja3g4602 203 SMART ras_sub_4 6 172 - -
Lja3g4602 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 202 - -
Lja3g4602 203 SMART arf_sub_2 1 173 - -
Lja3g4602 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Lja3g4602 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Lja3g4602 203 PANTHER LD21953P-RELATED 6 202 - -
Lja3g4602 203 MobiDBLite consensus disorder prediction 173 203 - -
Lja3g4602 203 Gene3D - 2 193 IPR027417 -
Lja3g4602 203 CDD Rab1_Ypt1 7 172 - -
Lja3g4602 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Lja3g4602 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Lja3g4602 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Lja3g4602 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Lja3g4602 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Lja3g4602 203 Pfam Ras family 10 169 IPR001806 GO:0003924|GO:0005525
Lja3g4602 203 SMART rab_sub_5 9 172 - -
Lja3g4602 203 SMART ran_sub_2 14 202 - -
Lja3g4602 203 ProSiteProfiles small GTPase Arf family profile. 2 178 - -
Lja3g4602 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Lja3g4602 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 192 IPR027417 -
Lja3g4602 203 ProSiteProfiles small GTPase Rab1 family profile. 4 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4602 Lja-Chr3 87877309 87880727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4602 10 125 EF-hand Containing Proteins AT5G27540 24.786 5.87e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4602 K07874 - gmx:100306147 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4602 3 87877309 87880727 Lja3g4602 3 87877309 87880727 ECH
Lja3g4602 3 87877309 87880727 Lja1g2928 1 35502709 35508520 PCT