Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g2928 | ATGAATCCCGAGTATGATTACCTGTTCAAGCTCCTTCTTATTGGTGACTCTGGTGTTGGCAAATCATGCCTTCTTCTGAGATTTGCTGATGATTCATACATTGAGAGCTACATAAGCACAATTGGAGTTGATTTTAAAATACGCACCGTTGAGCAGGATGCAAAAACCATTAAACTCCAGATCTGGGATACAGCTGGGCAAGAAAGATTTAGGACAATCACCAGTAGCTACTACCGTGGGGCACACGGGATCATTATTGTTTATGATGTAACAGATGAAGAGAGCTTTAACAATGTGAAGCAGTGGCTCAGCGAAATTGACCGATATGCCAGTGATAACGTCAACAAGCTTTTGGTTGGCAACAAGTCCGATCTGACTGCAAATAGAGCTGTCTCATATGAAACCGCTAAAGCATTTGCTGATGAAATAGGCATTCCTTTTATGGAAACAAGTGCAAAAGATGCTACAAATGTCGAACAGGCATTTATGGCTATGGCTGCTTCCATTAAGAATAGAATGGCAAGCCAACCTGCAAACAATGCAAGGCCTCCAACAGTGAATATCAGTGGAAAGCCAGTTGGGCAGAGTAGTGGTTGCTGCTCTTCCTAA | 609 | 0.4253 | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPANNARPPTVNISGKPVGQSSGCCSS* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g2928 | 202 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 174 | - | - | |
| Lja1g2928 | 202 | Pfam | Ras family | 10 | 170 | IPR001806 | GO:0003924|GO:0005525 | |
| Lja1g2928 | 202 | Gene3D | - | 2 | 192 | IPR027417 | - | |
| Lja1g2928 | 202 | PANTHER | LD21953P-RELATED | 6 | 201 | - | - | |
| Lja1g2928 | 202 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 178 | IPR027417 | - | |
| Lja1g2928 | 202 | MobiDBLite | consensus disorder prediction | 174 | 202 | - | - | |
| Lja1g2928 | 202 | SMART | rab_sub_5 | 9 | 172 | - | - | |
| Lja1g2928 | 202 | SMART | ran_sub_2 | 14 | 199 | - | - | |
| Lja1g2928 | 202 | SMART | arf_sub_2 | 1 | 177 | - | - | |
| Lja1g2928 | 202 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 163 | IPR005225 | GO:0005525 | |
| Lja1g2928 | 202 | SMART | ras_sub_4 | 6 | 172 | - | - | |
| Lja1g2928 | 202 | CDD | Rab1_Ypt1 | 7 | 172 | - | - | |
| Lja1g2928 | 202 | SMART | rho_sub_3 | 11 | 171 | IPR001806 | GO:0003924|GO:0005525 | |
| Lja1g2928 | 202 | ProSiteProfiles | small GTPase Ras family profile. | 1 | 202 | IPR001806 | GO:0003924|GO:0005525 | |
| Lja1g2928 | 202 | PANTHER | RAS-RELATED PROTEIN RABD2A-LIKE | 6 | 201 | - | - | |
| Lja1g2928 | 202 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Lja1g2928 | 202 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Lja1g2928 | 202 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Lja1g2928 | 202 | PRINTS | Transforming protein P21 ras signature | 112 | 125 | - | - | |
| Lja1g2928 | 202 | PRINTS | Transforming protein P21 ras signature | 147 | 169 | - | - | |
| Lja1g2928 | 202 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 202 | - | - | |
| Lja1g2928 | 202 | ProSiteProfiles | small GTPase Arf family profile. | 2 | 169 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g2928 | Lja-Chr1 | 35502709 | 35508520 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g2928 | 10 | 134 | EF-hand Containing Proteins | AT5G27540 | 25.984 | 7.49e-06 | 43.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g2928 | K07874 | - | gmx:100813403 | 384.03 |
Event-related genes