Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2939 ATGGAATCCTCTGTTTCAGCCACTGCATCACTCTCCCCTCGTTTCCCTCCAAACCCAATACCCAAAACCTTCCAAGTCTTCAGCTTCAAACCTTCGCCACATTCACCACCACCACCGTCCACCGCCACAAAAACCCGCCACAAAAAACTGCCAAGATTCACCACCAAGAAGCAGCAGAGCAGCAACAAGAACAAGGTGAAACCATTCAGAGAACAAGATGCTTTCCCATGCTCCTTACCCCTCCACAACAAAAACCCACAATTCATTTACAAAGACATCAAGAGCTTCGCTCGCCAGAACAAGCTCAAGGAAGCTCTCACCATTTTGGACTACATGGACCAACAGGGTATCCCTGTCAACCCCACAACCTTCTCTGCTGTCATCGCTGCTTGCATCCGCATCAAGTCATTGCAACAAGGAAGGGAAGTTCATACCCATATTCGAATCAATGGGCTTGAGAGTAACGTTTTTTTGCGGACAAAGCTGGTTCATATGTATACTTCTTGTGGGTCGTTGGAAGATGCACGCAAACTGTTTGATGGGTTGTCATGTGAGAGTGTTTATCCCTGGAATGCTTTGCTCAGAGGGACTGTGATTTCGGGCAAGAGACGATGCGGTGATGTGGTGGAGGCTTATTCAGAGATGAGAGCTTTGGGGGTTGAGTTGAATGTGTATAGTTTCACCAATGTTATTAAGAGCTTTGCGGGCGCGTCGGCGTTTTTTCAGGGATTGAAGACTCATGCCCTTTTGGTTAAGAATGGTTTGGTGGATAACCCCATTCTTAGGACTAGTCTGATTGATATGTACTTCAAGTGTGGTAAAGTTAAGCTTGCCCGTCGCGTGTTTGAGGAAATGTCTGAAAGGGATGTTGTTGTGTGGGGTGCTATGCTTGCTGGTTTCGCGCATAACAGGTTGCAGAGGGAAGTTTTGGAGTATGTAAGGTGGATGGTAGATGAAGGGGTAAAGCCGAATTCGGTTATAATGACAATTGTTATTCCTGTCGTTGGGGAAGTTCGTGCGCGGAGGTTGGGTCAGGAGCTTCATGCTTATGTGGTGAAGACAAAATCGTACTCGAAGCAAGTGCCTATTCAATCTGCTTTGATTGACATGTACAGCAAGTGCGGTGATCTGAGATCTGCAAGACAAGTTTTTTATAGCTCGGCGGAGAGAAATGTGGTTTGTTGGACGGCTCTGATGTCAGGTTATGCTTCCATTGGCAAACTAGAGCAGGCACTGAGGTCCACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTTGTGACAATTGCCACTGTTCTTCCAATTTGTGCTCAGTTAAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTACCTAATGTATCTATAACTTCTTCGTTAATGGTAATGTACTCTAAGTGCGGTGTGATTGATTATTCTGCAAGACTATTTGATGTAATGGAGCAAAGGAATGTGATTTCATGGACAGCTATGATTGATTCATATATGGAAAATGGGTATCTGTATGAAGCACTTGGTGTGATAAGGTCAATGCAATTGTCAAAACATAGGCCTGACTCAGTTGCCATATCAAGGATGTTGAGTGTTTGTGGTGAACTAAAACTTTCAAAGCTTGGGAAAGAGATTCATGGCCAGATCTTGAGAAGGGACTTTTCATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTATGGCGCTTTAGGAGATGTTAATAAGGCAAAGCTAGTATTTGATGCTGTTCCTGCTAAAGGTTCTATGACATGGACTGCTCTAATAAGGGCCCATGGATATAATGAGTTGTATCAAGATGCAATTGACCTTTTTGATCATATGCGGTCTAATGGTTCTTCTCCAAATCATTTCACTTTTGAAGTCATTCTGTTTATATGTGACAGAGCTGGATTTGTTGGTGATGCTTGTAGAATCTTCAATTTAATACCTAGGTATAAAATTAAAGCATCTAAGGAACATTTTGCTATAATGGTCCGACTTCTTACCCGCTGTGGTAAACTAGAGCAAGCTCAGAGATTTGTACAAATGAGTTCTTCCTTATAG 2082 0.4328 MESSVSATASLSPRFPPNPIPKTFQVFSFKPSPHSPPPPSTATKTRHKKLPRFTTKKQQSSNKNKVKPFREQDAFPCSLPLHNKNPQFIYKDIKSFARQNKLKEALTILDYMDQQGIPVNPTTFSAVIAACIRIKSLQQGREVHTHIRINGLESNVFLRTKLVHMYTSCGSLEDARKLFDGLSCESVYPWNALLRGTVISGKRRCGDVVEAYSEMRALGVELNVYSFTNVIKSFAGASAFFQGLKTHALLVKNGLVDNPILRTSLIDMYFKCGKVKLARRVFEEMSERDVVVWGAMLAGFAHNRLQREVLEYVRWMVDEGVKPNSVIMTIVIPVVGEVRARRLGQELHAYVVKTKSYSKQVPIQSALIDMYSKCGDLRSARQVFYSSAERNVVCWTALMSGYASIGKLEQALRSTIWMQQEGFRPDVVTIATVLPICAQLRALEQGKQIHAYALKHWFLPNVSITSSLMVMYSKCGVIDYSARLFDVMEQRNVISWTAMIDSYMENGYLYEALGVIRSMQLSKHRPDSVAISRMLSVCGELKLSKLGKEIHGQILRRDFSSVHFVSAELINMYGALGDVNKAKLVFDAVPAKGSMTWTALIRAHGYNELYQDAIDLFDHMRSNGSSPNHFTFEVILFICDRAGFVGDACRIFNLIPRYKIKASKEHFAIMVRLLTRCGKLEQAQRFVQMSSSL* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2939 693 MobiDBLite consensus disorder prediction 1 67 - -
Lja1g2939 693 Gene3D Tetratricopeptide repeat domain 87 240 IPR011990 GO:0005515
Lja1g2939 693 Pfam PPR repeat 494 520 IPR002885 -
Lja1g2939 693 Pfam PPR repeat 263 289 IPR002885 -
Lja1g2939 693 Pfam PPR repeat 93 117 IPR002885 -
Lja1g2939 693 Pfam PPR repeat 365 386 IPR002885 -
Lja1g2939 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lja1g2939 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Lja1g2939 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Lja1g2939 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 288 IPR002885 -
Lja1g2939 693 PANTHER OS07G0578800 PROTEIN-RELATED 44 686 IPR045215 GO:0003723|GO:0009451
Lja1g2939 693 TIGRFAM PPR: pentatricopeptide repeat domain 596 628 IPR002885 -
Lja1g2939 693 TIGRFAM PPR: pentatricopeptide repeat domain 494 528 IPR002885 -
Lja1g2939 693 TIGRFAM PPR: pentatricopeptide repeat domain 263 291 IPR002885 -
Lja1g2939 693 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 44 686 - -
Lja1g2939 693 Pfam PPR repeat family 390 434 IPR002885 -
Lja1g2939 693 Pfam PPR repeat family 593 636 IPR002885 -
Lja1g2939 693 Gene3D Tetratricopeptide repeat domain 241 340 IPR011990 GO:0005515
Lja1g2939 693 Gene3D Tetratricopeptide repeat domain 411 562 IPR011990 GO:0005515
Lja1g2939 693 Gene3D Tetratricopeptide repeat domain 563 692 IPR011990 GO:0005515
Lja1g2939 693 Gene3D Tetratricopeptide repeat domain 344 410 IPR011990 GO:0005515
Lja1g2939 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2939 Lja-Chr1 35704494 35707394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2939 102 688 Glycoside Hydrolase AT3G49170 26.544 1.04e-68 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2939 - - gmx:100809249 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4591 3 87746266 87747447 Lja1g2939 1 35704494 35707394 PCT