Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3807 ATGGAGGGTTCTTCTGGGTCTGGTTTCCATAATTCTGACAGTTCTAGGGCACTGAATAGTTCTGGAGTCTCTGACAGGAATCAAAGGCCTCATTGTCCTGAAGGAAACCCCTTCTCTGGTGAGGCAGCATCACATGATTCTGGTTTTAGAAAGGAAAGGGATTGGCTTCTGTTGGCACAAGGTGACCAGCATAAGAGCCTAGGTGGGTTTTGTGAGGATGAGGTGGAGGCTGATCCTCTTATTTGTTCTGTTGAATGGGGTGATATTAGCTTGAGGCAATGGTTAGATAAACCCGAACGATCCGTAGATCTGTTCGAATGCTTGCATGTGTTTAGGCAAATTGTAGAGATTGTTAATGTAGCGCATTCTCAGGGAGTTGTAGTTAACAATGTGAGGCCTTCATGCTTTGTCATGTCATCTTTCAACCATATCTCATTTATTGAATCAGCATCTTGTTCGGATACCGGCTCGGATTCTTTAGGAGAGGGAGTGAACTGCCAAGGTGTAGTAGAGGTTAAAACTCCAACATCTCGCTGCCCACACGATGTGCATCCGCAGAGTTTCGGAAGTGAAGACTTTATGCCTGCCAAGATTTCAACAACTGCTCTTTCAGATTCTAGCTGCATGCTGTCAAGTGCTGTGTATGCTGCTCGTGCATCGTTAATAGAAGAAACAGAAGAGAACAAAATGAAAGATAGGAGGAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCGTTTCCGATGAAACAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGCTGCTGGTACTCCTAGTTCATGTCCTTCCGATGTTTATCGATTGGGAGTTCTCCTTTTTGAGCTATTCTGCCCACTCAGCTCAAGAGAAGAGAAAAGTAGAACCATGTCTAGCCTCAGACATAGAGTTCTTCCTCCACAGATACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTACATCCAGACCCAAATAGTCGTCCAACCCTGGGGGAGTTGTTGCAGAGCGAGTTTCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGGGAAAGGACAGAGGATCAGGAGTTGTTGCTAGAATTCCTTTTGTTACTTCAACAGAGAAAACAGGAAATTGCAGAGAAGTTGCAACATACTATCTCTTTTCTGAGTTCAGATATTGAAGAAGTGACCAAGCAGCAAACTAGATTTAAAGAGATTACTGGTGATGATCGTTCAGCTTCAAGTTTCCCATCCATGACAATTGTCGACAGCAAGGATTCGGCTCATATAGGAACTAGAAAACGAGTCAGACTAGGGATGCGTGTTAAAAATATTGATGAATGTGAGGATAACATAGGTGATGATGAGATAAATCAGGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAAAACTTCAAGAAACTGGAGGCAGCGTACTTTCTAACAAGATGCAGACCAGCCTACTCAGCGAAACCGGTGGTTAGACATTCTGCGATAGCAAATGATGGTAGAGGTTCTTTTGCTGCTACTGAAAGAAGTTTCATCAATAACATATCATCAAAAGAACAGGGAAGGGATGGTACAAGTGCTTGGATAAATCCTTTCCTTGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGCTGAAGGTTAATGCAGACCTGAAGCAAGGAGATCTTTTACATTCTTCCAACTTAGTATGCGCACTCAGTTTCGATCGAGATGGAGAGTTTTTTGCTACTGCGGGTGTGAATAAGAAAATCAAAGTGTTCGAATGTGATACAATCATAAATGAGGATCGTGATATCCACTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGCATATGTTGGAACACATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTACTGTCTGAGATGAGGGAGCATGAACGGCGGGTGTGGTCCATAGATTTCTCATCAGCGGACCCGACAATGTTGGCAAGCGGAAGCGATGATGGTTCCGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTGTCGGTACCATCAAAACGAAGGCGAATGTATGCTGTGTTCAGTTCCCTCTGGATTCTGCTCGTTTCCTTGCATTTGGTTCTGCGGATCACCGGATATATTACTATGACCTCCGCAACTTAAAAGTGCCACTTTGTACTTTAGTTGGACATAATAAGACTGTGAGCTACATCAAGTTTGTAGACAATGTGAACCTTGTGTCTGCATCCACAGATAACACTTTGAAGCTCTGGGATTTATCTACGTGTTCATCTCGTGTTATACACTCTCCAATTCAATCATTCACGGGTCACATGAATGTTAAGAACTTTGTTGGATTATCAGTATCTGATGGTTATATTGCTACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCTTTCCCCATGCCAGTATTGCAGTTCAAGTTTCAGAATACAGATCCACTTTCAGGGCATGAAGTGGATGATGCTTCACAATTTGTGTCCTCAGTTTGTTGGCGCGGTCAATCCCCAACCTTGCTTGCTGCAAACTCCACTGGGAATGTCAAAATTCTGGAGATGGTTTAA 2649 0.4258 MEGSSGSGFHNSDSSRALNSSGVSDRNQRPHCPEGNPFSGEAASHDSGFRKERDWLLLAQGDQHKSLGGFCEDEVEADPLICSVEWGDISLRQWLDKPERSVDLFECLHVFRQIVEIVNVAHSQGVVVNNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGVNCQGVVEVKTPTSRCPHDVHPQSFGSEDFMPAKISTTALSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEAAGTPSSCPSDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQILLKWPKEASFCLWLLHPDPNSRPTLGELLQSEFLNEQRDDMEEREAAIELRERTEDQELLLEFLLLLQQRKQEIAEKLQHTISFLSSDIEEVTKQQTRFKEITGDDRSASSFPSMTIVDSKDSAHIGTRKRVRLGMRVKNIDECEDNIGDDEINQGSFLSKSSRLMKNFKKLEAAYFLTRCRPAYSAKPVVRHSAIANDGRGSFAATERSFINNISSKEQGRDGTSAWINPFLEGLCKYLSFSKLKVNADLKQGDLLHSSNLVCALSFDRDGEFFATAGVNKKIKVFECDTIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKVPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSTCSSRVIHSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPVLQFKFQNTDPLSGHEVDDASQFVSSVCWRGQSPTLLAANSTGNVKILEMV* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3807 882 ProSitePatterns Trp-Asp (WD) repeats signature. 764 778 IPR019775 -
Lja3g3807 882 Coils Coil 387 407 - -
Lja3g3807 882 SUPERFAMILY Protein kinase-like (PK-like) 63 348 IPR011009 -
Lja3g3807 882 Coils Coil 343 363 - -
Lja3g3807 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 780 - -
Lja3g3807 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 702 IPR001680 GO:0005515
Lja3g3807 882 SMART serkin_6 2 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3807 882 Gene3D Transferase(Phosphotransferase) domain 1 88 358 - -
Lja3g3807 882 CDD WD40 575 878 - -
Lja3g3807 882 Gene3D - 546 882 IPR015943 GO:0005515
Lja3g3807 882 MobiDBLite consensus disorder prediction 1 45 - -
Lja3g3807 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 697 - -
Lja3g3807 882 PANTHER PROTEIN SPA1-RELATED 2 1 882 IPR044630 GO:0009640
Lja3g3807 882 SUPERFAMILY WD40 repeat-like 570 879 IPR036322 GO:0005515
Lja3g3807 882 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g3807 882 Pfam WD domain, G-beta repeat 656 693 IPR001680 GO:0005515
Lja3g3807 882 Pfam WD domain, G-beta repeat 742 777 IPR001680 GO:0005515
Lja3g3807 882 Pfam WD domain, G-beta repeat 570 599 IPR001680 GO:0005515
Lja3g3807 882 ProSiteProfiles Protein kinase domain profile. 1 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3807 882 PANTHER PROTEIN SPA1-RELATED 3 1 882 - -
Lja3g3807 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 780 IPR001680 GO:0005515
Lja3g3807 882 PRINTS G protein beta WD-40 repeat signature 764 778 IPR020472 -
Lja3g3807 882 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Lja3g3807 882 PRINTS G protein beta WD-40 repeat signature 680 694 IPR020472 -
Lja3g3807 882 SMART WD40_4 739 777 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 786 825 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 836 880 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 611 650 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 696 735 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 565 600 IPR001680 GO:0005515
Lja3g3807 882 SMART WD40_4 653 693 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3807 Lja-Chr3 74988773 74994211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3807 646 824 Miscellaneous Gene Families AT5G08390 26.374 1.05e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3807 - - gmx:100811457 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3807 3 74988773 74994211 Lja3g4513 3 86944894 86947749 ECH
Lja3g3807 3 74988773 74994211 Lja3g3807 3 74988773 74994211 ECH