Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3644 ATGGTTGTGGCGGTTACTTTTCTTGTCTCCGTCGCTTTATCACTGTTGGCAGCGGCGGTTGTTTCTGGATCTCCGGCGACTCTCACATTGGAAAGAGCGTTTCCGACGAATCATGGAGTTGAGCTGAGTCATCTTCGTGCTCGGGACATGTTCCGGCATCGTAGAATGCTGTCGGAATCTTCAAACGGTGTCGTTGATTTCTCCGTTCAAGGCACCTTCGATCCCTACCAAGTTGGGCTCTATTTTACGACAGTGCAGTTAGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGTAGTGATGTTCTCTGGGTCAGTTGCAGCTCCTGCAATGGTTGTCCTCAGACAACTGGGCTTAAGATTCAGCTTAATTTTTTTGACCCCGGGCGTTCATCAACATCTTCATCAATCTCTTGTTCTGACAAAAGGTGCAAAGCTGGAATCCAGACATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCTTACAGTTTCCAGTATGGAGATGGTAGCGGGACATCAGGCTACTACGTGTCGGATATGTTGCATCTCGACACTATTTCCGAGGGATCCGTGACGTCAAATTCATCAGCTCCTGTAGTTTTTGGTTGTAGTAACCAGCAGAGTGGGGACTTGACAAAATCTGACAGAGCGGTCGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCTCAGCTCTCCTCACAAGGGATTGCTCCAAGAGTATTCTCCCATTGTCTTAAAGGGGATAGTAGTGGTGGCGGCATATTGGTTCTCGGCGAGATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATTACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTCAACGGCCAGACATTGCAAATTGATTCATCAGTTTTCACAACATCAAACAATAGAGGCACCATTGTTGATTCTGGAACAACCTTAGCGTATCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCACAATCCATACGTGCGGTTTCTTCCAAGGGAAATCAGTGTTACTTAACCACTGCCAGAGTCACTGACATTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATCTATGGTTTTAGGACCACAGGACTACCTTATACAACAGAATTTTAATGGTGGTGGAGCAGTGTGGTGCATTGGCATTCAGAAAATTCAGGGTCAAGGAATAACAATTCTAGGAGATCTTGTATTAAAAGATAAAATTATTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTCGACGGTTAATGTCTCAGCCACAACTGGCACCGGCACAAGCGAGTTTGTGAATGCTGGGAGTGGAGAGACAGGTGGAAGCACTTCTTTACGCGATGGACTTAGATTGACAAATACAGGGTTCTTGGCCTTCTTCCTTCATATAACACTGATTTGCAGCCTTGTAATTTTGTAG 1497 0.4529 MVVAVTFLVSVALSLLAAAVVSGSPATLTLERAFPTNHGVELSHLRARDMFRHRRMLSESSNGVVDFSVQGTFDPYQVGLYFTTVQLGTPPVEFNVQIDTGSDVLWVSCSSCNGCPQTTGLKIQLNFFDPGRSSTSSSISCSDKRCKAGIQTSDASCSSQNNQCSYSFQYGDGSGTSGYYVSDMLHLDTISEGSVTSNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTPLVPLQPHYNLNLQSISVNGQTLQIDSSVFTTSNNRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSIRAVSSKGNQCYLTTARVTDIFPQVSLNFAGGASMVLGPQDYLIQQNFNGGGAVWCIGIQKIQGQGITILGDLVLKDKIIVYDLAGQRIGWANYDCSSTVNVSATTGTGTSEFVNAGSGETGGSTSLRDGLRLTNTGFLAFFLHITLICSLVIL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3644 498 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Lja3g3644 498 SUPERFAMILY Acid proteases 76 444 IPR021109 -
Lja3g3644 498 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 457 - -
Lja3g3644 498 CDD pepsin_A_like_plant 81 440 IPR034161 -
Lja3g3644 498 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
Lja3g3644 498 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Lja3g3644 498 Gene3D Acid Proteases 268 448 IPR021109 -
Lja3g3644 498 PANTHER ASPARTYL PROTEASES 7 457 IPR001461 GO:0004190|GO:0006508
Lja3g3644 498 Gene3D Acid Proteases 58 267 IPR021109 -
Lja3g3644 498 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Lja3g3644 498 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Lja3g3644 498 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3644 Lja-Chr3 72236608 72242165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3644 55 442 Miscellaneous Gene Families AT1G44130 28.079 7.02e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3644 - K00924 gmx:100791299 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3644 3 72236608 72242165 Lja3g3644 3 72236608 72242165 ECH
Lja3g3644 3 72236608 72242165 Lja3g0934 3 9498546 9502479 PCT