Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0934 ATGCTGCCACCCGCCACAGCCGCGGTGATTGTCTTCTTCTGCCTCGCGCTCATCTCGCCGGCGTCTCCGGTGACCCTGACGCTGGAGAGAGCGTTCCCTTCCAATCATGGAGTGGAGTTGAGTGAGCTCAGAGCTAGAGACATGCTCAGACATCGAAGATTCTTGCAGTCTGTCAGCTATGTTGTTGATTTCCCTGTTAAAGGCACCTTTGACCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACCCCACCAAGGGAATTTTATGTTCAAATTGACACTGGGAGTGATGTTCTCTGGGTTAGTTGTGGTTCTTGCAATGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTATTTCGATCCGGGGAGTTCGTCGACATCTTCATTGATAGCTTGTTCGGATCAAAGATGTAGGAAGGGAGCACAGTCGTCGGATACAAGCTGTTCTGGTCAGAACAACCAATGCACTTACACATTCCAGTATGGAGATGGTAGTGGGACCTCAGGCTATTACGTGTCGGACTTGATGAACTTTGCCAGTCTTTCGGAGGGATCCCTGCCGTCAACCGCTGCAGCGCCCGTAGTTTTTGGTTGTAGCAACCTGCAGACTGGGGACTTGACAAAGTCTGATAGAGCCATTGACGGGATATTTGGATTCGGGCAAGATGGCATGTCCGTTATCTCCCAGCTCTCATCGCAAGGATTATCACCAAGAGTGTTCTCTCACTGCTTAAAAGGAGATAGTAGTGGCGGAGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATGATTTATAGTCCACTTGTTCCTTCACAGCCCCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATTTTGCCAATTGATTCTGCTGTTTTTGCGACATCAAATAACAGAGGCACCATTATTGATTCTGGGACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAACGCGATAACAGTTGCTATTCCACAATCTGTACGCACGGTTCTTTCAAGGGGAAATCAGTGTTACTTAATGACCACCAGCAACTTTGACATTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTCTAGGACCCAGTGACTACCTTATACAGAAGAGTTATATTGGCGATGGATCAGTGTGGTGTATTGGCTTCCAGAAAATCCCGGGTCAAAGTGTAACAATTCTAGGAGACCTTGTTCTAAAAGACAAAATTTTTGTCTATGATCTCGTTGATCAACGCATTGGATGGGCTAACTATGACTGTTCATTATCGGTTAATGTGTCTGCATCAACTGGAACCGGTAGAAGTGAATTTGTTAACGCAGGAGAGTTCAGTGGAAGCACTTCTTTACATGATGGACCTCACATGTTCATAAAGACAGGGCTCTTTGCTCTCTTCATGCACATAATAGTGATTGTATTTTTGTAG 1476 0.458 MLPPATAAVIVFFCLALISPASPVTLTLERAFPSNHGVELSELRARDMLRHRRFLQSVSYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPGSSSTSSLIACSDQRCRKGAQSSDTSCSGQNNQCTYTFQYGDGSGTSGYYVSDLMNFASLSEGSLPSTAAAPVVFGCSNLQTGDLTKSDRAIDGIFGFGQDGMSVISQLSSQGLSPRVFSHCLKGDSSGGGILVLGEIVEPNMIYSPLVPSQPHYNLNLQSISVNGQILPIDSAVFATSNNRGTIIDSGTTLAYLAEEAYNPFVNAITVAIPQSVRTVLSRGNQCYLMTTSNFDIFPQVSLNFAGGASLVLGPSDYLIQKSYIGDGSVWCIGFQKIPGQSVTILGDLVLKDKIFVYDLVDQRIGWANYDCSLSVNVSASTGTGRSEFVNAGEFSGSTSLHDGPHMFIKTGLFALFMHIIVIVFL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0934 491 SUPERFAMILY Acid proteases 75 440 IPR021109 -
Lja3g0934 491 CDD pepsin_A_like_plant 78 437 IPR034161 -
Lja3g0934 491 Pfam Xylanase inhibitor C-terminal 281 433 IPR032799 -
Lja3g0934 491 Gene3D Acid Proteases 265 444 IPR021109 -
Lja3g0934 491 Gene3D Acid Proteases 57 264 IPR021109 -
Lja3g0934 491 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 16 454 - -
Lja3g0934 491 PANTHER ASPARTYL PROTEASES 16 454 IPR001461 GO:0004190|GO:0006508
Lja3g0934 491 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Lja3g0934 491 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Lja3g0934 491 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Lja3g0934 491 ProSiteProfiles Peptidase family A1 domain profile. 78 433 IPR033121 -
Lja3g0934 491 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0934 Lja-Chr3 9498546 9502479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0934 52 438 Miscellaneous Gene Families AT1G44130 26.866 4.48e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0934 - K00924 gmx:100811632 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3644 3 72236608 72242165 Lja3g0934 3 9498546 9502479 PCT