Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3603 ATGGAGGAGGTTGGAAGTGTACTCCACTTTCTTCAGGACAAGACCATTCTTCTTATTGGAGCCACTGGCTTTATTGCCAAAATTTTTCTGGAGAAGGTATTGAGAGTTCAACCAAATGTTAAGAAGGTTTATCTTCTTTTAAGAGCCTCAGATGAAAAATCAGCCATTCGTCGCTTGGACAATGAGATATTAGGGAAGGACTTGTTTAATCTGCTTAAGGAAAAATTGGGTGCAAATTTTAAGTCCTTTATTTCAGAAAAGTTAACTTTGGTGCCTGGGGACATTTCTTATGAAGACTTGGGTTTGAAGGATTCCATTCTAAGGGAAGAGATTTGCAAACAAACAGATGTTATCATTAATTTGGCCGCAACTACTAACTTTGATGAAAGGTATGATATAGCGCTGGGTCTAAATACCTTTGGAGCAAAGCATGTCATGAATTTCTCCAAGCTATGTATTAAACTCAAAGTTCTTGTCCATGTATCCACAGCTTACGTGTGTGGTGAGAGAGGTGGGCTCATACAAGAGACCCCATATCACTTTGGTGATTCACTGAATGGTGTGCCTGGATTAGACATCGATGTAGAAAAGAAAATAGTGTGTGACCAATTGGATGAGCTCAGAGAGCACGGAGCCACAGAGCAAGAAATTAAAGTGGCCATGAAGGACTTAGCTATTAAAAGGGCAAATGTGTATGGATGGCCTAACACATACGTATTTACAAAGGCAGTTGCAGAGATGCTTGTGGAACAACTAAAAGGAGACTTGCCAGTGGTTATTTTGCGTCCTACCATCGTTACAAGTACATTCAAAGAACCTTTCCCTGGTTGGTCTGAGGGTGTAAGAACCATTGACAGTTTAGCTGTTAATTATGGAAAGGGAAAACTAACATGCTTCCTTGGAGATCTCAATGGAGTTGTCGATGTGATACCAGCTGATATGGTGGTGAATGCAATGCTAGTGGCCATGGTAGCTCATGCAAATCAACCAAGTGATCAGGCCACATATCATGTGGGTTCCTCTGTTAGAAATCCAGTTACATACCATAATCTCCAAGACTATGGATTAAGATATTTCACAGCAAAACCATGGATCAACAAGGATGGATCGAGCGTAAAGGTTGGCAGAGTAAATGTATTAACAGACATGGCTAGCTTCCGGAGATACATGTTCATTCGCTACCTGCTTCCATTAAAGGGACTTAAGCTGGCCAACACAACATTTTGCCAGTACTTTAAGGGGACATATCTAGAGCTCAACAGGAAGATCCAGGTTGTGATGCGACTTGTGGAACTTTACAGGCCTTACTTGTTCTTCAGTGGCGTATTTGATGATATGAACACAGAGAAGTTGCGGATTGCAGCAAGACAAGGTGAGACAGAGAAAGACTTGTTTTACTTCGACCCCAAAGATATTGATTGGGATGATTACTTCATGAACACTCATATCCCTGGTATCTTCATGTTTAATTTCAAAAACACATTTTTGTTTGCTCTAGTACATAAAAAACATTTAAATATAAAAATAAATACAAAAAACATAATGCACTTCCTTGAGGACAAGACCATTTTGGTCACCGGTGCAACTGGCTTCCTCGCAAAAATTTTTGTTGAAAAGATACTCAGAGTTCAACCAAATGTTAAGAAACTTTATCTTCTTCTGAGAGCCACAGATGCTGAGTCTGCTACTCAACGCTTACACAATGAGATCATAGGGAAGGACTTGTTTAGATTGCTGAAGGAAAATCTGGGGTCAAAATTCAATTCCTTTGTCTCTGAAAAGATGACTTTGGTGCCTGGGGACATTTCTTATGAGGACTTGAATTTGAAGGACTACATTCTGAGGGAAAAGATTTGCAATGAAACAGATGTCATAGTTAATTTAGCTGCAACAACTAACTTTGATGAAAGATATGATGTTGCATTGGGTATAAATACATTAGGAGTTAAGCATGTTTTGAGCTTCGCCAAAAAATGTATTAAACTAAAGGTGCTTCTCCACGTATCAACAGCATTTATATGTGGTGAGAGACGAGGGCTGATAGTAGAGGATCCACACCCGTATGGTGCGTCACTTAATGGAGTGCCAGGACTAGACATTGACACAGAAAAGAGACTGGTCCAGAAGACATTGAATCAGCTTCTAGAAGAGGGAGCCACAAAATATGAAATAGAAGTGGCTATGAAGAACTTGGGTATCAAAAGAGCAACTCTATATGGATGGCCAAACACTTATGTTTTTACCAAGGCAATGGGAGAAATGCTTGTAGAAACTTTGAAGGGAAACATGTCCGTTGTTATTGTACGTCCCACGATCGTTACTAGCACTTTCAAAGAACCTTTCCCTGGTTGGGTTGAAGGTTTAAGAACCATAGACAGCTTAATTGTTGCTTATGGTAAAGGAAAACTAACATGCTTCGCTGCGGATCTTAAGGCAGTTTTCGACGTGATACCAGCTGACATGGTGGTTAATGCAATGCTTGTTGCAATGGTGGCTCATGCAAATCAACCAGATGATATCATATATCATGTGGGTTCCTCTGTTAGAAATCCAGTTAGATACGGAAATCTCCTTGACTACTGCTTAAGATATTTCACAGAAAAACCTTTACTAAACAAGGATGGAAATCCAGTCAAGGTTGGCAAAATTACCATGTTGGGCAACATGACTAGCTTCCACAGATACATGTTCATCCGTTACTTGCTTCCATTCAAGGGACTAGAGCTGGCCAATGCAGTGTTATGCAAGTATTTTCAAGAAATGTACCTTGACCTCAGCAGTAAGATCCGTACTGTAATGCGGTTGGCTGACCTGTACCAGCCTTACCTGTTCTTCCATGGCATATTTGATAATATGAATACAGAGAAGTTGCAATCAGCTGCAAGACAAGGAGGGGTAGAGATGGATGTGTTTTACTTTGACCCGAAAATGATTGATTGGGAGGACTACTTCATGAATATCCATTTTCCTGGTACCATCAAGTACGCCTTCAAGCGATGA 3000 0.4027 MEEVGSVLHFLQDKTILLIGATGFIAKIFLEKVLRVQPNVKKVYLLLRASDEKSAIRRLDNEILGKDLFNLLKEKLGANFKSFISEKLTLVPGDISYEDLGLKDSILREEICKQTDVIINLAATTNFDERYDIALGLNTFGAKHVMNFSKLCIKLKVLVHVSTAYVCGERGGLIQETPYHFGDSLNGVPGLDIDVEKKIVCDQLDELREHGATEQEIKVAMKDLAIKRANVYGWPNTYVFTKAVAEMLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGVVDVIPADMVVNAMLVAMVAHANQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWINKDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVVMRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGIFMFNFKNTFLFALVHKKHLNIKINTKNIMHFLEDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRATDAESATQRLHNEIIGKDLFRLLKENLGSKFNSFVSEKMTLVPGDISYEDLNLKDYILREKICNETDVIVNLAATTNFDERYDVALGINTLGVKHVLSFAKKCIKLKVLLHVSTAFICGERRGLIVEDPHPYGASLNGVPGLDIDTEKRLVQKTLNQLLEEGATKYEIEVAMKNLGIKRATLYGWPNTYVFTKAMGEMLVETLKGNMSVVIVRPTIVTSTFKEPFPGWVEGLRTIDSLIVAYGKGKLTCFAADLKAVFDVIPADMVVNAMLVAMVAHANQPDDIIYHVGSSVRNPVRYGNLLDYCLRYFTEKPLLNKDGNPVKVGKITMLGNMTSFHRYMFIRYLLPFKGLELANAVLCKYFQEMYLDLSSKIRTVMRLADLYQPYLFFHGIFDNMNTEKLQSAARQGGVEMDVFYFDPKMIDWEDYFMNIHFPGTIKYAFKR* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3603 999 Pfam Male sterility protein 393 492 IPR033640 -
Lja3g3603 999 Pfam Male sterility protein 900 998 IPR033640 -
Lja3g3603 999 PANTHER MALE STERILITY PROTEIN 2-RELATED 513 996 IPR026055 GO:0080019
Lja3g3603 999 Gene3D - 501 879 - -
Lja3g3603 999 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 340 IPR036291 -
Lja3g3603 999 PANTHER MALE STERILITY PROTEIN 2-RELATED 3 488 IPR026055 GO:0080019
Lja3g3603 999 CDD FAR-N_SDR_e 521 869 - -
Lja3g3603 999 CDD FAR-N_SDR_e 14 363 - -
Lja3g3603 999 Gene3D - 9 381 - -
Lja3g3603 999 CDD FAR_C 898 997 IPR033640 -
Lja3g3603 999 PANTHER FATTY ACYL-COA REDUCTASE 3 488 - -
Lja3g3603 999 PANTHER FATTY ACYL-COA REDUCTASE 513 996 - -
Lja3g3603 999 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 512 845 IPR036291 -
Lja3g3603 999 Pfam Male sterility protein 19 319 IPR013120 -
Lja3g3603 999 Pfam Male sterility protein 525 826 IPR013120 -
Lja3g3603 999 CDD FAR_C 392 489 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3603 Lja-Chr3 71345336 71377709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3603 618 997 Acyl Lipid Metabolism Gene Families AT4G33790 60.526 6.41e-168 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3603 K13356 - gmx:100788680 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3603 3 71345336 71377709 Lja3g3603 3 71345336 71377709 ECH
Lja3g3603 3 71345336 71377709 Lja3g0963 3 9904663 9912299 PCT