LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3586	ATGACCCAGGTCCTTCATTTTGCTTCTTCTTCACCAACAACCTCTTCCTCTCCCTCTCCCTTCTCTTCTTCCCACGCCATTTTTGCAATTCTTGTCACCCTTTTCAGGAAATCATTTGTTGCTGCTTTCAAGAGTGGCAGGAAACACCTCTGTGCTATGGACATAGGGTCCCCTACTAACGTGCGCCATGTTGCTCATGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGATGTGCCCAGAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCTTATGACTCAAGAGGGAACAGTGTGCCAACAATTCTGCTGCTAATGCAAAGGCATCTGTATGCTCAAGGAGGACTGCAGGTGGAGGGGATTTTCAGAATTAATCCAGACAATAGTCAAGAAGAAAATGTCAGGGATCAATTGAACATGGGATTAATCCCAGAAGGTATTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAGCTTCCTACAGGAATTCTGGATTCATTATCGCCAGAGCAGGTAATGCAATGCGAAACTGAGGAAGAATGTGTTGAGCTAGCAAGGAATCTACCTCACACTGAAGCTGCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACAGGAACATGTTAATAAGATGAATGCGCGTAACATTGCCATGGTTTTTGCACCAAATATGACTCAGATGGCAGACCCTTTCACTGCATTGATGTATGCAGTTCAAGTGATGAATTTCTTGAAGTCACTTATATTAAGGACACTGCAGGAAAGAAAGGATTCTGTGGTAGAATCTCATCCTAAATTATATCCAGGACCATCTGATGAGAATGGTAACCGTACACTTTTGGAGTCTTGCCAGCAAGATACTATGGCAGAAAATGAAGAGGCTGAAGAAACAGTCGTATCCGAGAAAACTGTCGTAGAATGTTCCCCTGAACCACTCCAAAATAACACCTCAACTGGAGGAGAATCTGACAGTTTGGTAAGCTCTTCTGAGAATACAATTTGCAATGAGGACTTGTATTGCGAGTTTCCACCCAAAGGAAACATGGGAAAGGGTAAGCCTGCACAATCTAGTAGCTCAAATGCTAGAAAAGGGACCAAAAAGACCCGAGGCAAGCAACCTGTGGTTGATCAAACAGTGCCAGCTGAGAAAAGGGGAATGAGGAGTGCGAGCAACACAGATTCAAGATATGAAAGAGTTGAAGCCTGGCGGTGA	1287	0.4421	MTQVLHFASSSPTTSSSPSPFSSSHAIFAILVTLFRKSFVAAFKSGRKHLCAMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPDVPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQEENVRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELARNLPHTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKSLILRTLQERKDSVVESHPKLYPGPSDENGNRTLLESCQQDTMAENEEAEETVVSEKTVVECSPEPLQNNTSTGGESDSLVSSSENTICNEDLYCEFPPKGNMGKGKPAQSSSSNARKGTKKTRGKQPVVDQTVPAEKRGMRSASNTDSRYERVEAWR*	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3586	428	Gene3D	Rho GTPase activation protein	88	285	IPR008936	GO:0007165
	Lja3g3586	428	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	100	285	IPR000198	GO:0007165
	Lja3g3586	428	CDD	RhoGAP	117	273	-	-
	Lja3g3586	428	PANTHER	PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN	27	428	-	-
	Lja3g3586	428	ProSiteProfiles	CRIB domain profile.	55	68	IPR000095	-
	Lja3g3586	428	SMART	PBD_5	55	89	IPR000095	-
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	322	353	-	-
	Lja3g3586	428	CDD	CRIB	53	96	-	-
	Lja3g3586	428	SUPERFAMILY	GTPase activation domain, GAP	95	274	IPR008936	GO:0007165
	Lja3g3586	428	Pfam	RhoGAP domain	117	251	IPR000198	GO:0007165
	Lja3g3586	428	Pfam	P21-Rho-binding domain	54	81	IPR000095	-
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	284	303	-	-
	Lja3g3586	428	SMART	RhoGAP_3	114	277	IPR000198	GO:0007165
	Lja3g3586	428	PANTHER	MKIAA1688 PROTEIN	27	428	IPR044785	GO:0005096
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	413	428	-	-
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	369	428	-	-
	Lja3g3586	428	MobiDBLite	consensus disorder prediction	332	353	-	-
	Lja3g3586	428	Gene3D	CRIB domain	52	85	IPR036936	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3586	Lja-Chr3	71031876	71036169	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3586	-		K20642	ccaj:109798318	595.504

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g3586	3	71031876	71036169	Lja3g0988	3	10134099	10138007	PCT