Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0988 ATGACAGAGGTGCTACATTCTCCAACACCAACATCATCGCCAACCACTCCTTCTTCCTCTGATGGCGGCATTCTCATTCTCAGCCGTCCAGACCAAGAAGAACAACCACCCTCTTCTTCTTCCTCTGCTTCCTCTGTTTCCCCTGCTTCTTGTTCTGTAGCTGAGGCTGTGGATGGTTTTTCTACGGTCACTGACGGTGACTCAGAGGAGATCACGGTGGTCACTGACAGAAACCACCACAGGACGCAGCAGGAGCTGTCCCTTTTGGCAATTCTTGTGACCCTTTTAAGGAAATCCTTGGTTGCTTGCAAGAGTGAAGGGAGGGAACTCTGTGCCATGGAAATTGGTTGGCCCACTAATGTGCGCCATGTTGCGCATGTTACCTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCACAAGGCCTCCCAGTGCAAGTGCAACTGTGTTTGGAGTTTCAACAGAATCAATGCAGTTATCATATGACACAAGAGGGAACAGTGTGCCAACAATTTTGTTACAAATGCAAAGGCACTTGTATGCCCAAGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCAAGAGGAATATGTTAGGGATCAAATAAATAGGGGAGTGATCCCAGAAGGCATTGATGTACATTGTTTGGCAGGACTAATCAAGGCTTGGTTTAGGGAACTGCCTACAGGTATTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGTCAAAATGAAGAGGATTGTGCTGAACTGGCAAGGCAACTACCTCACACTGAAGCTTCCCTTCTTGACTGGGCTATTAATCTGATGGCTGATGTTGTCCAAGAGGAACATCTGAGTAAGATGAATGCACACAATATTGCCATGGTTTTCGCGCCAAATATGACTCAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTAATATTAAGGACACTGCAGCGAAGAAAGGATTCTGTGGTAGAACCCTCTCCTAGATTTGATTTAGAGCCTTCTGATGAGAATGGGGAGGACCAAAGTCCTTTGGGATCGTACCAGCAAGATGTTGCCTCAGAAAATGAAGAGGAAGTGGAATCCTTTGTTTGGGAGAAAGCTGTATCAGAATGTTCCCCTGAACCCTTCCAAAACAAAGATTCAACTGAAGGAGAACCTGAAAGTTTGATGAGCTCTTCTGAGATTCTAGTTTGTGAAGAGGATTTGTATTGTCAGTTTCCACCCAAAGGAAATGTTGGGATGAGTAAGACTGGTCAATCAAGTAGTTCAATTGCTAAAAAGGGCTTCAAGAAAACCAGAGGCCAGCAACCTATGATCCATGGAACAGTGGCTGTTGAGAAAAAAGGTATTAGCAATTTGAGCCTCATAGACTCAATATCAGAGAGGATAGAAGCCTGGCGGTGA 1470 0.4497 MTEVLHSPTPTSSPTTPSSSDGGILILSRPDQEEQPPSSSSSASSVSPASCSVAEAVDGFSTVTDGDSEEITVVTDRNHHRTQQELSLLAILVTLLRKSLVACKSEGRELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINADNTQEEYVRDQINRGVIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEHVMQCQNEEDCAELARQLPHTEASLLDWAINLMADVVQEEHLSKMNAHNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRTLQRRKDSVVEPSPRFDLEPSDENGEDQSPLGSYQQDVASENEEEVESFVWEKAVSECSPEPFQNKDSTEGEPESLMSSSEILVCEEDLYCQFPPKGNVGMSKTGQSSSSIAKKGFKKTRGQQPMIHGTVAVEKKGISNLSLIDSISERIEAWR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0988 489 MobiDBLite consensus disorder prediction 396 411 - -
Lja3g0988 489 MobiDBLite consensus disorder prediction 344 374 - -
Lja3g0988 489 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g0988 489 MobiDBLite consensus disorder prediction 393 413 - -
Lja3g0988 489 PANTHER MKIAA1688 PROTEIN 1 489 IPR044785 GO:0005096
Lja3g0988 489 ProSiteProfiles Rho GTPase-activating proteins domain profile. 160 345 IPR000198 GO:0007165
Lja3g0988 489 Pfam P21-Rho-binding domain 114 140 IPR000095 -
Lja3g0988 489 MobiDBLite consensus disorder prediction 435 457 - -
Lja3g0988 489 Gene3D Rho GTPase activation protein 148 344 IPR008936 GO:0007165
Lja3g0988 489 Gene3D CRIB domain 111 144 IPR036936 -
Lja3g0988 489 ProSiteProfiles CRIB domain profile. 115 128 IPR000095 -
Lja3g0988 489 SMART RhoGAP_3 174 337 IPR000198 GO:0007165
Lja3g0988 489 Pfam RhoGAP domain 177 311 IPR000198 GO:0007165
Lja3g0988 489 MobiDBLite consensus disorder prediction 32 49 - -
Lja3g0988 489 MobiDBLite consensus disorder prediction 435 451 - -
Lja3g0988 489 SUPERFAMILY GTPase activation domain, GAP 155 334 IPR008936 GO:0007165
Lja3g0988 489 SMART PBD_5 115 149 IPR000095 -
Lja3g0988 489 CDD RhoGAP 177 333 - -
Lja3g0988 489 CDD CRIB 113 153 - -
Lja3g0988 489 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g0988 489 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0988 Lja-Chr3 10134099 10138007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0988 - K20642 gmx:100784019 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3586 3 71031876 71036169 Lja3g0988 3 10134099 10138007 PCT