Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3554 ATGGGCGTGCAACTTGAAGAACCAGATTCCAAACCGATCTTGATCCGCGAGGTTTGGGCCTCCAACCTTGAATCTGAATTCCAATTGATCCGTGAAGTCATCGATGAATTCCCCTTCATCTCCATGGACACCGAGTTTCCCGGCGTCATCTACCGCCCTACCACCGCCGACACGGCGAAACCCTACCTTAACCGCCTCCAACCCTCCGATCACTATCGTCTCCTGAAATCCAACGTCGACGCGCTCAACCTCATCCAGGTCGGTTTAACCTTCTCCGACGCCGACGGCAATCTTCCAGATCTCGGAACCGGCACCAACCGCTTCATCTGGGAGTTCAATTTCCGCGACTTTGACATCGAGCGTGACGCACACGCGCTGGACTCTATAGATCTGCTCCGCCGTCAGGGGATCGATTTCCGCCGGAATGTCACCGACGGTGTCGACTCGGTGGATTTCGCTGAGTTAGTTATGTCGTCTGGACTCGTTTGCAATGACTCGGTGAGTTGGGTGACGTTTCACAGCGCGTACGATTTCGGCTACCTGGTGAAGGTGCTGACGCGGCGGAACCTGCCGAATGGGTTGGAGGAATTTCTGAAATTGTTGAGGGTGTTTTTCGGGAAAAATGTTTATGATGTGAAGTACATGATGCGGTTCTGTGAGGCACTGTATGGTGGGTTGGACCGGGTGGCTCAGACCCTGAATGTGGACCGGGCGGTTGGGAAGTGCCATCAGGCCGGGTCTGACAGCTTGTTGACGTGGCATGCGTATCAGAAGATGAGGGAGATTTATTTCATTAACGATGAGCCCCAGAAACATGCCGGGGTTTTGTTCGGCTTGGAGGTTTCTGTAAATTGA 855 0.5345 MGVQLEEPDSKPILIREVWASNLESEFQLIREVIDEFPFISMDTEFPGVIYRPTTADTAKPYLNRLQPSDHYRLLKSNVDALNLIQVGLTFSDADGNLPDLGTGTNRFIWEFNFRDFDIERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCEALYGGLDRVAQTLNVDRAVGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEVSVN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3554 284 SUPERFAMILY Ribonuclease H-like 11 278 IPR012337 -
Lja3g3554 284 Gene3D - 3 282 IPR036397 GO:0003676
Lja3g3554 284 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 10 281 - -
Lja3g3554 284 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 281 IPR039637 GO:0004535|GO:0030014
Lja3g3554 284 Pfam CAF1 family ribonuclease 18 147 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3554 Lja-Chr3 70517268 70518692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3554 K12581 - gmx:100781759 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3554 3 70517268 70518692 Lja3g3554 3 70517268 70518692 ECH
Lja3g3554 3 70517268 70518692 Lja3g1015 3 10415161 10416129 PCT