Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1015 ATGAACTCCATCAATGAAATCCCAAAACCCAAACTGAAGCCGGTGATCATCCGAGAAGTGTGGGCCTTCAACTTAGAAGCTGAATTCCAACTCATCCGCGGACTCATCCATCGCTACCCTTTCATCTCCATGGATACTGAGTTCCCCGGCGTCATCTTCAAGCCCGCCGAACCCCACAACCACCACAACCTCCGCCCCGCTGATACCTACCGTCTCATCAAGGCCAACGTGGACGTGCTCAACCTCATCCAAGTTGGCCTCACCCTCTCCGACGCTGCCGGCAACCTCCCCGACCTCGGCACCGACGACTGCACGTTCATCTGGCAGTTCAACTTTCGGGACTTCAACGTCACTCGCGACGCCCACGCTCCTGACTCCGTCGCTCTGCTCCGAAACCAAGGGATTGACTTCGCACGCAATGCTGCCGCCGGCGTCGATTCGGCCCGCTTCGCTAGGTTGATGATGTGGTCGGGGCTTCTTCGCAACAATGCTGTGAGCTGGGTCACGTTCCACTCGGCGTATGATTTTGCTTACTTGATCAAGATTCTGACTCGCCGGAGCCTTCCGACTAGACTGGAGGATTTCTTGAGGTTCGTGAGGGTGTTTTTCGGAGACAAGGTTTATGATATCAAGCATTTGATGAAATTCTGCGATTCTCTCTATGGCGGTCTTGATAAGATTGGGCAGATTCTCAAAGTGGATCGAGTGGCGGGAAAATCACATCAAGCTGGCTCTGATAGTTTGCATACAATGCAAGTGTTTCAGAAGATCAAGGACGTTTATTTTAAGAACGATGGCCATAAGAAACACGTAAATGTCTTGTATGGGCTGGAGATAGAATTCAATCCTAGTTTGAACCACTTGTATCCTCCACCCACCCAAACGTGTTCGAGTCGGGTAGTGCCACTTTACTACATTCCCGCACACTCGAATATGATGCCTCTATTCAAATATGTACAATTTGGTTAA 969 0.5067 MNSINEIPKPKLKPVIIREVWAFNLEAEFQLIRGLIHRYPFISMDTEFPGVIFKPAEPHNHHNLRPADTYRLIKANVDVLNLIQVGLTLSDAAGNLPDLGTDDCTFIWQFNFRDFNVTRDAHAPDSVALLRNQGIDFARNAAAGVDSARFARLMMWSGLLRNNAVSWVTFHSAYDFAYLIKILTRRSLPTRLEDFLRFVRVFFGDKVYDIKHLMKFCDSLYGGLDKIGQILKVDRVAGKSHQAGSDSLHTMQVFQKIKDVYFKNDGHKKHVNVLYGLEIEFNPSLNHLYPPPTQTCSSRVVPLYYIPAHSNMMPLFKYVQFG* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1015 322 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 9 279 - -
Lja3g1015 322 SUPERFAMILY Ribonuclease H-like 10 278 IPR012337 -
Lja3g1015 322 Gene3D - 3 280 IPR036397 GO:0003676
Lja3g1015 322 Pfam CAF1 family ribonuclease 22 145 IPR006941 -
Lja3g1015 322 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9 279 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1015 Lja-Chr3 10415161 10416129 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1015 K12581 - gmx:100811298 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1015 3 10415161 10416129 Lja3g1015 3 10415161 10416129 ECH
Lja3g3554 3 70517268 70518692 Lja3g1015 3 10415161 10416129 PCT