Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3517 ATGGAAGGCCGCATCTATGGCTTCACAGTTCCTCTCCTCCTCCTTCTCCTCCTCATCCCCACTTTAGCATTACCGGAGAATCCAAAAACACCTTCATCAACGAGTCAGATAAACTCCAACTCAGTCCTGGTTGCTCTTCTTGACTCGCATTACACTGAACTCGCTGAGCTTGTAGAAAAGGCCATGCTTCTGCAGAAGCTAGAAGACACCGTCGCCGCCCACAACATCACCATCTTCGCCCCCACCAACGAAGCACTGGAACGCAACCTCGACCCTGATTTCAAACGCTTCCTCCTCGAACCCGGTAATCTCCACTCCCTCCAGACCCTGCTTTTGTTTCATGTCATTCCGACCCGAATAGGATCTGATTACCCACACGGGTCGACCCGTCATCTCACCCTCTCCAACCACCACCTCCGCCTCAAGAAGAATCTCACCGCCGGAGACTGGACTGTCGACCGGGTCACGGTAACTCACCCGGAAGTCGTGACCCGACCCGATGGTGTCATACATGGAATCTCTCGCCTTCTAGTTCCGCGTTCCGTCGAGGACGAATTCAACCGCCGACGGAATCTCCGCGCCATTACCGCCGTGAAGCCAGAGGCCGCGCCGGAGGTTGACCCCAGAACCCACCGATTGAAGAAAACACCTCCCGCGGCGAAACCCGGTTCCTCGCCGGCACTCCCAATCTATGAAGCTCTTGCCCCAGGACCCTCTCTTGCTCCGGCGCCAGCTCCGGGCCCTGGTGGCCCCCACCACCACTTCAACGGCGAGGCGCAGGTGAAGGATTTCATCCAAACCCTGCTTCACTATGGCGGGTACAACGAGATGGCTGACATTCTGGTGAACCTTACGTCGCTGGCTACCGAGATGGGTCGTTTGGTGTCGGAGGGTTATGTTCTGACTGTATTAGCTCCGAACGATGAGGCTATGGCGAAGCTGACGACGGAGCAGCTGAGCGAACCGGGTGCGCCGGAGCAGATAATGTACTACCATTTGATACCGGAGTATCAGACGGAAGAGAGCATGTACAATGCGGTGAGAAGGTTCGGGAAGGTGAACTACGATACCCTGCGGTTGCCGCACAAGGTGGTGGCTAAGGAGGCTGATGGGTCGGTCAAGTTCGGCCATGGAGACGGGTCGGCTTATTTGTTCGACCCGGATATCTTTACCGATGGCCGGATCTCGGTCCAGGGGATTGACGGGGTTTTGTTTCCGATGGAGGAGGCGCCGGAGGAGGTTAAACCCGATTCGCAGACGGGTCAACCCGCTAAAGTGGTGGTTAAGCATAGAAGAGGAAAATTGTTGGAAGCAGCATGCAAGATGCTTGGAACCTTTGGACAGCATTCTAGATTCTCCTCTTGCCAATGA 1371 0.5573 MEGRIYGFTVPLLLLLLLIPTLALPENPKTPSSTSQINSNSVLVALLDSHYTELAELVEKAMLLQKLEDTVAAHNITIFAPTNEALERNLDPDFKRFLLEPGNLHSLQTLLLFHVIPTRIGSDYPHGSTRHLTLSNHHLRLKKNLTAGDWTVDRVTVTHPEVVTRPDGVIHGISRLLVPRSVEDEFNRRRNLRAITAVKPEAAPEVDPRTHRLKKTPPAAKPGSSPALPIYEALAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVNYDTLRLPHKVVAKEADGSVKFGHGDGSAYLFDPDIFTDGRISVQGIDGVLFPMEEAPEEVKPDSQTGQPAKVVVKHRRGKLLEAACKMLGTFGQHSRFSSCQ* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3517 456 Gene3D FAS1 domain 253 406 IPR036378 -
Lja3g3517 456 ProSiteProfiles FAS1/BIgH3 domain profile. 38 177 IPR000782 -
Lja3g3517 456 SUPERFAMILY FAS1 domain 240 407 IPR036378 -
Lja3g3517 456 Pfam Fasciclin domain 286 406 IPR000782 -
Lja3g3517 456 Pfam Fasciclin domain 50 179 IPR000782 -
Lja3g3517 456 Gene3D FAS1 domain 42 180 IPR036378 -
Lja3g3517 456 SMART fasc_3 77 180 IPR000782 -
Lja3g3517 456 SMART fasc_3 302 407 IPR000782 -
Lja3g3517 456 MobiDBLite consensus disorder prediction 199 254 - -
Lja3g3517 456 ProSiteProfiles FAS1/BIgH3 domain profile. 261 389 IPR000782 -
Lja3g3517 456 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 456 - -
Lja3g3517 456 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 456 IPR044654 -
Lja3g3517 456 SUPERFAMILY FAS1 domain 31 180 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3517 Lja-Chr3 69810586 69813566 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3517 - - gmx:100782264 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3517 3 69810586 69813566 Lja3g1047 3 10845912 10850405 PCT