Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1047 ATGGCCATGGATGGCGGCGGCATCTATGGCGGCACCACCATCTTCTACACTTCCCTCCTCCTCTTCTCAATCTTCTCCATCTCATCACAGTCTTCTCAAATTCCGGGTTCGGGTCCGGGTCAAATAAACTCCAACTCCATCTTGGTAGCACTTCTGGACTCACATTACACTGAGCTAGCAGAGCTCGTAGAGAAAGCAATGCTTCTTCAAACCTTAGAACAAACAGTGGGCTCTCACAACATCACCATCTTCGCTCCCAAAAACGAAGCTCTAGAGCGAGATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCAGAAACCTTCACTCTCTCCAGACACTTCTCAAGTCCCACATCATCCCCATGAGAATCAGTGGATCCGAAAACGCTCCCGGGTCGACCCACCACCGCACACTCGCCGGACACCACCACCTGAGATTGGAGACAAACGGAACGGGTCGGCAGTGGTGCGTTGATGGCTCCCGGATCCTCCACCCGGACGCGATTACCCGACCCGACGGTGTCATCCACGGGATCGAGCGTTTACTCATCCCCCGCTCCGTCCAAGACGACTTCAACCGCCGCCGGAGCCTCACCTCAATCGCCGCCGTGAAGCCAGAGTCCGCGCCGGTGGTTGACCCGAGAACCCACCGGTTAAAGAAACAACCACCACCGCAGAAACCAGGTTCATCCCCTGTTTTACCGATCTACGACGCAATGGCTCCGGGTCCTTCCCTCGCTCCGGCGCCAGCACCAGGCCCCGGCGGGCCCCACCACCACTTCAACGGCGAGGCCCAGGTGAAGGACTTCATCCACACGCTTCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTCAACCTCACCTCCTTAGCCACCGAAATGGGTCGGTTGGTTTCCGAAGGCTACGTTCTCACCGTCCTCGCTCCCAACGATGAAGCCATGGCGAAACTGACGACGGAGCAGTTGAGTGAACCCGGTGCGCCGGAGCAGATCATGTACTACCATTTGATCCCGGAGTATCAGACGGAGGAGAGTATGTACAATGCGGTTCGGAGATTTGGGAAGGTGAGGTATGATACGCTCCGGCTACCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCGGTGAAATTCGGGCACGGTGATGGGTCGGCTTATTTGTTCGACCCGGATATCTTCACCGATGGAAGGATCTCAGTGCAAGGGATTGATGGGGTGTTGTTACCTCCACAAGAACAAGATGAAGAAGAAGATGAGAAGGAGAAACCGGTGACCCGTACCCGTTCGGGTCAACCCGCTAAGGTTGTTGTCAAGCAAAGAAGAGGAAAATTACTAGAAGCAACATGCTGGATGCTTGGAACAGTTGGACAACATTCTAGATTCACCTCTTGTCAATAA 1410 0.5525 MAMDGGGIYGGTTIFYTSLLLFSIFSISSQSSQIPGSGPGQINSNSILVALLDSHYTELAELVEKAMLLQTLEQTVGSHNITIFAPKNEALERDLDPDFKRFLLEPRNLHSLQTLLKSHIIPMRISGSENAPGSTHHRTLAGHHHLRLETNGTGRQWCVDGSRILHPDAITRPDGVIHGIERLLIPRSVQDDFNRRRSLTSIAAVKPESAPVVDPRTHRLKKQPPPQKPGSSPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIFTDGRISVQGIDGVLLPPQEQDEEEDEKEKPVTRTRSGQPAKVVVKQRRGKLLEATCWMLGTVGQHSRFTSCQ* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1047 469 Gene3D FAS1 domain 46 187 IPR036378 -
Lja3g1047 469 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 8 469 IPR044654 -
Lja3g1047 469 ProSiteProfiles FAS1/BIgH3 domain profile. 43 184 IPR000782 -
Lja3g1047 469 Gene3D FAS1 domain 287 414 IPR036378 -
Lja3g1047 469 ProSiteProfiles FAS1/BIgH3 domain profile. 268 396 IPR000782 -
Lja3g1047 469 SUPERFAMILY FAS1 domain 247 414 IPR036378 -
Lja3g1047 469 MobiDBLite consensus disorder prediction 412 437 - -
Lja3g1047 469 Pfam Fasciclin domain 293 413 IPR000782 -
Lja3g1047 469 Pfam Fasciclin domain 55 186 IPR000782 -
Lja3g1047 469 SMART fasc_3 82 187 IPR000782 -
Lja3g1047 469 SMART fasc_3 309 414 IPR000782 -
Lja3g1047 469 MobiDBLite consensus disorder prediction 207 259 - -
Lja3g1047 469 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 8 469 - -
Lja3g1047 469 SUPERFAMILY FAS1 domain 35 187 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1047 Lja-Chr3 10845912 10850405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1047 - - gmx:100802279 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3517 3 69810586 69813566 Lja3g1047 3 10845912 10850405 PCT