Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3485 ATGGCGACTCTGGATTCCGACGTGCAAATGGTTCCCGCCGACGATCCCTCCGCCGCCGGCGCCGGTCCTTCTTCTTCTTCCAAGAAACCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTTGCTCTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCTATCTGCCGAAACCACATCATGGATCGCTGTATTGAGTGTCAGGCCAATCAGGCTAGCTCCACTGCTGATGAGTGCACTGTTGCTTGGGGTGTTTGTAACCATGCTTTTCATTTTCATTGCATTAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGTCACTAG 360 0.5194 MATLDSDVQMVPADDPSAAGAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3485 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 119 - -
Lja3g3485 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 119 IPR013083 -
Lja3g3485 119 SUPERFAMILY RING/U-box 31 116 - -
Lja3g3485 119 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g3485 119 Pfam RING-H2 zinc finger domain 51 109 IPR024766 GO:0008270
Lja3g3485 119 PANTHER RING BOX 1 119 - -
Lja3g3485 119 CDD mRING-H2-C3H2C2D_RBX1 51 112 - -
Lja3g3485 119 ProSiteProfiles Zinc finger RING-type profile. 53 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3485 Lja-Chr3 68575385 68578743 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3485 K03868 - egr:104436408 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3485 3 68575385 68578743 Lja3g1097 3 11410718 11413967 PCT