Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1097 ATGGCGGAGACTCTTGATTCCGATGTGGCGATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGGCCCTTCTTCCAAGAAGTCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATTGTCGTTGATAACTGTGCTATCTGCCGCAACCACATCATGGATCTCTGTATAGAGTGCCAAGCTAACCAGGCTAGCCCAACTAGCGAAGAATGCACTGTGGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTCGATGGCTCAAGACCCGCCAAGTATGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG 354 0.5198 MAETLDSDVAMVPAGEPSSSAGPSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1097 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Lja3g1097 117 PANTHER RING BOX 4 117 - -
Lja3g1097 117 SUPERFAMILY RING/U-box 29 114 - -
Lja3g1097 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Lja3g1097 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Lja3g1097 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 4 117 - -
Lja3g1097 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Lja3g1097 117 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1097 Lja-Chr3 11410718 11413967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1097 K03868 - gmx:100789570 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3485 3 68575385 68578743 Lja3g1097 3 11410718 11413967 PCT