Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3289 ATGGTTAGCCTCAAGTTGACATGCATTGTGATTATGTGTGTCGCCGTGATGGGTGCTGCACCGGTGGTGCAAGCCATCACATGCTCTCAGGTCACAGCGAACGTTGCACCGTGCATTACTTACCTCACAGGGGGCGGAGCTCCTTCCCCAGGGTGCTGCGCCGGAGTGAAGAGCGCCTTTGCTGCTGCAACCACCACCCCTGCCCGGAGGGCCATATGCAACTGCTTGAAGTCTGCTGCCGGTGGTATTCCTGGCGGCATCAACGACAACTTCGCTCAGGCACTCCCAGCAAAGTGCGGTGTCAACATCCCTTTCAAGATCAGCGTTTCCACCAACTGCGCTAGCATCAATTAA 354 0.565 MVSLKLTCIVIMCVAVMGAAPVVQAITCSQVTANVAPCITYLTGGGAPSPGCCAGVKSAFAAATTTPARRAICNCLKSAAGGIPGGINDNFAQALPAKCGVNIPFKISVSTNCASIN* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3289 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2 115 - -
Lja1g3289 117 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 115 IPR036312 -
Lja1g3289 117 SMART aai_6 28 113 IPR016140 -
Lja1g3289 117 PANTHER - 2 115 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 CDD nsLTP1 26 113 - -
Lja1g3289 117 Pfam Protease inhibitor/seed storage/LTP family 28 113 IPR016140 -
Lja1g3289 117 Gene3D - 25 117 IPR036312 -
Lja1g3289 117 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Lja1g3289 117 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3289 Lja-Chr1 40815050 40816081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3289 6 117 Acyl Lipid Metabolism Gene Families AT3G51590 44.643 4.03e-28 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3289 - - zju:107431013 135.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3289 1 40815050 40816081 Lja3g3408 3 67194496 67195399 PCT