Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3391 ATGTTGGATTCTTCTAACAACTCAGCGGTGAAGATAGAAGTGCAGCCAGAGCCGGCAGAGCCGGTAACTGGTGGCGGCGGCGGCGGAGGCGGGATTCTACAGCAATGGAGTAGGGAGGACTTGATCAAGAGAGGGTCGTTGGGATTGAGAGGACTTGCTCTGTTTTTCTCTTTGATTTCCCTCATCCTTGTAGCCAGTAACAAGCATGGTGGTTGGGCAGATTTCGACAAGTATCCACAATACAGGTATTTGTTGGCCATAGCTATTCTGTCTTGTTTTTACACTGGAGGCCAAGTGCATCTTGGAGTTCATGAACTTTCCACTGGGAGGAAAATGCTTCAGCCAAGAATTGCAGTGCTGTTTGATTTTATTGGAGATCAGATTATGGCATATCTCTTGATATCATCAGCGTCTTCAGCGATTCCAATAACAGATACCATAAGAGAAGGAGGAGACAATATATTTACAGACTCATCATCTTCAGCCATTAGCATGTCCTTTCTAGCCTTTATATGTCTCGCACTATCAGCCATTATATCAGGACACAAACTATCAGCTCAAACTTGTATCTGA 573 0.4468 MLDSSNNSAVKIEVQPEPAEPVTGGGGGGGGILQQWSREDLIKRGSLGLRGLALFFSLISLILVASNKHGGWADFDKYPQYRYLLAIAILSCFYTGGQVHLGVHELSTGRKMLQPRIAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSSSAISMSFLAFICLALSAIISGHKLSAQTCI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3391 190 Pfam Casparian strip membrane protein domain 42 172 IPR006702 -
Lja3g3391 190 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 16 189 - -
Lja3g3391 190 PANTHER CASP-LIKE PROTEIN 4B1 16 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3391 Lja-Chr3 66863469 66865507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3391 27 150 Miscellaneous Gene Families AT1G79780 24.444 1.22e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3391 - - pvu:PHAVU_008G090400g 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3391 3 66863469 66865507 Lja3g3391 3 66863469 66865507 ECH
Lja1g3315 1 41207549 41209772 Lja3g3391 3 66863469 66865507 PCT