Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3315 ATGTCGTCGACTATGGAGGAGGAGGAGAATTCAACGCCAAAGATACATGTACAGACTCCGCCAATGGCCCCCGCCGGGGACCGCCAGGCTCCGGCGGCTTCCACCGGCGGAGTTGGTGGAATCCTGAGGCGGTGGAGGAGGGAGGACTTGTTGAAGAGAGGGTCATTGGGTTTGCGAGGGATCGCCCTGCTTTTCTCTCTGATCTCGTTCATTGCCATGGCTAGCAACCAGCACGGTGATTGGAGGGAATTCGACAAATATGAAGAGTACAGGTATTTGCTGGCTATTGCGATTTTGTCCTGTCTGTACACTGGAGCTCAAGTGTTCCGTCAAGTTCATGAACTTTCTACAGGAAAACAACTGATTCAGCCCAGAATGGCAGCTATGATTGATTTTATTGGAGATCAGATCATTGCATATCTTTTGATATCGTCAGCTTCTTCAGCAATTCCAATAACAAATAGAATGAGGGAAGGAGCAGATAATATATTCACGGACTCTTCAGCTTCAGCTATTAGCATGTCCATTTTCGCCTTCTTGTGTCTTGCATTGTCAGCTCTCATTTCTGGCTACAAACTATCAACACAACCTTATATCTGA 600 0.4733 MSSTMEEEENSTPKIHVQTPPMAPAGDRQAPAASTGGVGGILRRWRREDLLKRGSLGLRGIALLFSLISFIAMASNQHGDWREFDKYEEYRYLLAIAILSCLYTGAQVFRQVHELSTGKQLIQPRMAAMIDFIGDQIIAYLLISSASSAIPITNRMREGADNIFTDSSASAISMSIFAFLCLALSALISGYKLSTQPYI* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3315 199 Pfam Casparian strip membrane protein domain 51 181 IPR006702 -
Lja1g3315 199 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g3315 199 PANTHER CASP-LIKE PROTEIN 4B1 28 198 - -
Lja1g3315 199 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 28 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3315 Lja-Chr1 41207549 41209772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3315 34 159 Miscellaneous Gene Families AT1G79780 23.358 7.85e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3315 - - gmx:100818718 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3315 1 41207549 41209772 Lja1g3315 1 41207549 41209772 ECH
Lja1g3315 1 41207549 41209772 Lja3g3391 3 66863469 66865507 PCT