Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3389 ATGGAACCCGCCGCAGGCAAACCGGGCTTCCTCCGGAACGTTCTGATACGGTTATTTCTCTTCGGCGTTTTCATCGTCCTCGTTCGCTTCGCTTACGTCATCATCATCGCCGGCGAGTCCTGCAACCTCGGCGACTTCTGCTTCTTCTCCGCGCCGGAGTCTCTCAACGTCGCCGGCACCCTCGCCGCAACCGGGACAAGCACCCTCGCCGCGCGCTCTGCCGTCGGCGACGCGTCGCCGGAGGCTTACGCTAGCAAGGACTGGATCAACGGCGTCCGGTTCTACTCCTCCGTGTTTCAGGACCTCGTCGCCGCCGGGCACCTCTCGCCGGAGTCGAAATCGCTCTGCGTGGAGACGCCGACCGGGCGGGATGTTCTCGCTCTGCGGGAGATCGGCGTGACGGACGCTGTTGGGATCTCGAAGAAGGCGTGGAAGCCGTTGGTGAAATCCGGCAACGCGCACCGGATTCCGTTCGGGAACAACAGCTTTGACTTCGTGTTCGCCGGCGAAGGCGGCCTGGAGAAGTCGCCGCGGGTGGCGGAATTCGCCGGCGAGGTCGCCCGGACGCTGAAACCCGAAGGGTTTGCTGCGTTCCATGTAAAGGCCAATGATTCTTACAGTTACAATTCATTTGTTGATTTGTTCAAATTTTGTTGCAAAGTAGTGAGATTGAATGATATAGAAGGGTTTGATTCATCGATGCCACACATCAGAGAAATTGTTGTGAAGAAAGAGGGTTATGGGGTTGGTCAATTTGATGGTGAATCTGCAGATTTTCATGGGAAATGCTCTGTTCCAGGGTATAAACAAGAGTTGATTAGGAATGCTGAGCCTTTGATTGAAGAGGAGCCTCTGAAGCCATGGCTCACTCTCAAGAAGAATGTGAAGAACATCAAGTACCTTCCTTCAGTGGTTGATATAAGCTTTAAGAATAGGTATTTGTATGTGGATGTTGGTGCTAGAAGCTATGGGTCTAGCATTGGAAGCTGGTTCAAGAAGCAGTATCCAAAACAGAACAAGACCTTTCATGTGTATGCAATTGAAGCAGATAAATCGTTTCATGAGGAGTATGGATTGAAAAAGGGGGTGACATTGCTGCCTTATGCTGCTTGGGTGAAGAATGAGACACTGGTTTTCGAGATTAACCACGACCCGGGGAAGAAAGTCGAGGTTAATGGGGAGAGGGGAATGGGGAGGATTCAGCCATTGCAGTCTCAGGGTGAGGTTTTTGATGGTGGTGAGGTTCAGAAGATACAAGGGTTTGATTTTGCCAACTGGTTGAAGAGCACGGTTTCGAAGAATGATTATGTTGTGATGAAGATGGATGTGGAGGGTACTGAGTTTGATTTGATTCCTAGATTGTTTGAAACTGGGGCTATCTGTTTGGTGGATGAGATTTTTCTTGAGTGCCATTACAATAGATGGCAGAGGTGTTGCCCTGGAGAGAGGAGTCCAAAGTATGAGAAAACATATGAGCAATGCTTGGAGCTCTTCACTTCTCTCAGATCAAGTGGAGTTCTTGTTCATCAATGGTTTTAG 1539 0.5042 MEPAAGKPGFLRNVLIRLFLFGVFIVLVRFAYVIIIAGESCNLGDFCFFSAPESLNVAGTLAATGTSTLAARSAVGDASPEAYASKDWINGVRFYSSVFQDLVAAGHLSPESKSLCVETPTGRDVLALREIGVTDAVGISKKAWKPLVKSGNAHRIPFGNNSFDFVFAGEGGLEKSPRVAEFAGEVARTLKPEGFAAFHVKANDSYSYNSFVDLFKFCCKVVRLNDIEGFDSSMPHIREIVVKKEGYGVGQFDGESADFHGKCSVPGYKQELIRNAEPLIEEEPLKPWLTLKKNVKNIKYLPSVVDISFKNRYLYVDVGARSYGSSIGSWFKKQYPKQNKTFHVYAIEADKSFHEEYGLKKGVTLLPYAAWVKNETLVFEINHDPGKKVEVNGERGMGRIQPLQSQGEVFDGGEVQKIQGFDFANWLKSTVSKNDYVVMKMDVEGTEFDLIPRLFETGAICLVDEIFLECHYNRWQRCCPGERSPKYEKTYEQCLELFTSLRSSGVLVHQWF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3389 512 Pfam Methyltransferase domain 149 198 IPR013216 GO:0008168
Lja3g3389 512 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 300 456 IPR029063 -
Lja3g3389 512 Pfam Methyltransferase FkbM domain 317 477 IPR006342 -
Lja3g3389 512 Gene3D Vaccinia Virus protein VP39 128 256 IPR029063 -
Lja3g3389 512 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 149 209 IPR029063 -
Lja3g3389 512 Gene3D Vaccinia Virus protein VP39 297 476 IPR029063 -
Lja3g3389 512 PANTHER METHYLTRANSFERASE 1 512 - -
Lja3g3389 512 PANTHER METHYLTRANSFERASE 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3389 Lja-Chr3 66826629 66830605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3389 - - gmx:100811015 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3389 3 66826629 66830605 Lja3g3389 3 66826629 66830605 ECH
Lja1g3321 1 41308105 41310210 Lja3g3389 3 66826629 66830605 PCT