Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3321 ATGGAACGTACCGCAGGCAAGTTCGGCTCTCTCCGGAATCTTCTAATACGGTTTCTCATCTCCGGCGTCTTCATCATCGCCGTCCGTTTCGCTTACGTCATCTCCATCGCCGGCGAGTCCTGCAACGTCGCCGATTTCTGCTTCTTCTCCCTGCCGGAGTCTCTCAGCCACGTCATCGCCGGCACCGGCCCCCTCGCCGTCGAGTCTGCTTCCGGTGGCAGTGGTTTGTCGCCGGCGGAGCTTTACACCAGCAAGGACTGGCTCGACGCCGTGCATTTCTACTCGTCGGCGTTTCAGGACCTTGTCGCCGGCGGCTACCTCTCGCCGGAGGCGAATGCGCTGTGCGTGGAGACGCCGACTGGGCGGGATGTCTTCGCGCTGAGGGAGATCGGCGTAAGGAATGCTATCGGGATCTCGAGGAAGGCGGTGAAGCCTTTGGTGAAGTCCGGCACCGGTGATCGGATTCCGTTTGGTGACGCGACGTTCGACTTTGTGTTTTCCGGTGAGGGTTCCTTCGCGAGGTCGGCGAAGCCGGTGGAGTATGCGGCGGAGGTTGCTCGGACGCTGAAATTGGGAGGGTTTGCGGTGTTCCATTTCACAAACCCTAAAGATACGTATAGTTTCAATTCATTTCTTGATTTGTTCCATTGTTTCAGAGTAGTGAAGTTACATGGTTTAGAAGGGTTTGATTCTTCACTGCCTTATATACATGAAACTGTTTTGAAAAAAGAGTGTGATGGTAATGGTAAACATGATGGTGATTTTTCCAATGGGAAATGTTATGTTCCTGAGTATAAGAGAGATTTGGTTAGGAATGCTGAGCCTTTGATTGCGAAGGAGCCGTTGAAGCCATGGCTTACTTTGAAGAGTAATATTAAGAACATAACGTACCTTCCTTCGATAGTTGATATAAGCTTTAAGAATAGGTATTTGTATGTTGATGTTGGAGCAAGAAGTTACGGCTCGAGCATAGGATCTTGGTTTAAGAAACAGTATCCTAAGCAGAACAAGACCTTTCATGTGTATGCGATTGAAGCTGATAAGACTTTTCATAAGGAGTATGGGTTGAAGAAGGGGGTCACTCTGTTGCCTTATGCTGCATGGGTGAAGAATGAGACCTTGACGTTTGAGATTCATCGCGATCCGGGGGAGAAGGTTGAGGTTAAAGGAAGGGGGATGGGTAGGATTCAACCTTTGCGGTCTTCAGGGAAGGAGGAGTTTGATGGGGAAATGGAGAAGATAAGGGGATTTGATTTTGCCAAATGGTTGAAGAACACGGTTTCGAAGAATGACTTTGTTGTGATGAAAATGGATGTGGAGGGTACTGAATTTGATCTGATTCCGAGGTTGTTTGAAACTGGGGCTATCTGTTTGGTGGACGAGGTTTTCCTGGAATGCCATTACAATAGGTGGCAGCGATGTTGCCCTGGGCAGAGGAGTTCAAAGTATGAGAAAACATATGACCAATGCTTGGAGCTCTTCAATTCTCTTAGACAAAGTGGAGTTCTTGTTCATCAGTGGTTTTAA 1527 0.4866 MERTAGKFGSLRNLLIRFLISGVFIIAVRFAYVISIAGESCNVADFCFFSLPESLSHVIAGTGPLAVESASGGSGLSPAELYTSKDWLDAVHFYSSAFQDLVAGGYLSPEANALCVETPTGRDVFALREIGVRNAIGISRKAVKPLVKSGTGDRIPFGDATFDFVFSGEGSFARSAKPVEYAAEVARTLKLGGFAVFHFTNPKDTYSFNSFLDLFHCFRVVKLHGLEGFDSSLPYIHETVLKKECDGNGKHDGDFSNGKCYVPEYKRDLVRNAEPLIAKEPLKPWLTLKSNIKNITYLPSIVDISFKNRYLYVDVGARSYGSSIGSWFKKQYPKQNKTFHVYAIEADKTFHKEYGLKKGVTLLPYAAWVKNETLTFEIHRDPGEKVEVKGRGMGRIQPLRSSGKEEFDGEMEKIRGFDFAKWLKNTVSKNDFVVMKMDVEGTEFDLIPRLFETGAICLVDEVFLECHYNRWQRCCPGQRSSKYEKTYDQCLELFNSLRQSGVLVHQWF* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3321 508 Gene3D Vaccinia Virus protein VP39 297 471 IPR029063 -
Lja1g3321 508 PANTHER METHYLTRANSFERASE DOMAIN PROTEIN 51 508 - -
Lja1g3321 508 PANTHER METHYLTRANSFERASE 51 508 - -
Lja1g3321 508 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 297 448 IPR029063 -
Lja1g3321 508 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 150 225 IPR029063 -
Lja1g3321 508 Gene3D Vaccinia Virus protein VP39 133 225 IPR029063 -
Lja1g3321 508 Pfam Methyltransferase FkbM domain 314 473 IPR006342 -
Lja1g3321 508 Pfam Methyltransferase domain 148 197 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3321 Lja-Chr1 41308105 41310210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3321 - - gmx:102670512 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3321 1 41308105 41310210 Lja1g3321 1 41308105 41310210 ECH
Lja1g3321 1 41308105 41310210 Lja3g3389 3 66826629 66830605 PCT