Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3387 ATGCAGAGATTCCATCTGGGTCTCTCTCAAAACACCCCCTTCATGATGGATTCTTCCTTATCATCATCATCATCCCCTATCTCCCTCAAAAACCAAAACACACCCTTTCAAGACCCTCCACAAGCTTCCCCAAAACCCTCCAAGAAAAGCTTGGTAGCTTCTCTAATGGGCGCTGCCACCACCCTCCGCACCCCTTCCTTCAAAGAAGACAACTACTTCATCTCCCTTCTCAAATCCTCTGAGAAGAAAGCCCTTCAGGAGCTCAAGGAAAAGCTCCTTGCTTCTTCTGATTCTTCTTCTGATTCTGGTTCTTCCATGTGGGGTGTTCCTCTCCTTGGTGGTGATGACAGAGCTGATGTGATACTCTTGAAGTTTCTCAGAGCGAGGGACTTCAGGGTTGGTGAAGCTCTCAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGCTGCTGAAACTGTTGCAGAAGAGGATTTGGGGTTCAAGGAGCTTGAAGGGGTGATTGCTTATATGCAAGGCTATGACAGAGAGGGACACCCTGTTTGCTACAATGCCTATGGGGTGTTCAGGGACAAGGACATGTATGAGAGGATTTTTGGAGATGAAGAGAAGCTGAAGAAGTTTCTAAGGTGGAGGGTTCAGGTCCTTGAAAGAGGGATCAAGCTTCTTCATTTTAAGCCTGGTGGGGTCAATTCTCTCATTCAGGTCACTGACCTTAAGGACATGCCCAAGAGAGAGCTCAGGGTGGCTTCTAATCAGATCCTTTCTCTGTTTCAAGACAATTACCCTGAAATGGTGGCTCGCAAGATTTTCATCAATGTGCCCTGGTACTTTAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGGACTAAGAGCAAGTTTGTAATCTCTAAGGAAGGAAATGCTGCAGAGACACTCTACAAATTTATAAGGCCTGAAGACATTCCTGTTCAGTATGGAGGACTGAATCGTCCCAGCGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACTGTCAAAGGAGGGGAGAAAGTAAACATACAAATAGAAGGAATTGAGGCTGATGCAACTATCACGTGGGACATTGTGGTTGGAGGTTGGGACTTGGAATATAGTGCTGAGTTTGTCCCAAATGCTGAAGGAAGCTACACCATTGCAGTTGAGAAGCCAAGGAAGATTGGAGCCTCAGAAGAAGCAATTCACAACTCATTCACTTCTAAAGAATCTGGGAAAATGGTACTCTCTGTTGATAACTCTGCCTCCAGGAAGAAAAAGGTTGCTGCTTATCGCTATGTCGTCCGCAAATGTAGCACCAGTTGA 1338 0.4567 MQRFHLGLSQNTPFMMDSSLSSSSSPISLKNQNTPFQDPPQASPKPSKKSLVASLMGAATTLRTPSFKEDNYFISLLKSSEKKALQELKEKLLASSDSSSDSGSSMWGVPLLGGDDRADVILLKFLRARDFRVGEALNMLLKCLAWRKEFAAETVAEEDLGFKELEGVIAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLNRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEADATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKIGASEEAIHNSFTSKESGKMVLSVDNSASRKKKVAAYRYVVRKCSTS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3387 445 Pfam CRAL/TRIO, N-terminal domain 84 141 IPR011074 -
Lja3g3387 445 Pfam CRAL/TRIO domain 166 325 IPR001251 -
Lja3g3387 445 Gene3D - 161 336 IPR036865 -
Lja3g3387 445 ProSiteProfiles GOLD domain profile. 307 441 IPR009038 -
Lja3g3387 445 Gene3D - 75 149 - -
Lja3g3387 445 PANTHER PATELLIN-6 32 443 - -
Lja3g3387 445 Gene3D GOLD domain 337 439 - -
Lja3g3387 445 MobiDBLite consensus disorder prediction 15 48 - -
Lja3g3387 445 MobiDBLite consensus disorder prediction 15 49 - -
Lja3g3387 445 SMART sec14_4 164 328 IPR001251 -
Lja3g3387 445 CDD SEC14 162 326 IPR001251 -
Lja3g3387 445 SUPERFAMILY CRAL/TRIO domain 163 328 IPR036865 -
Lja3g3387 445 PANTHER PATELLIN-1 32 443 IPR044834 GO:0008289
Lja3g3387 445 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 157 331 IPR001251 -
Lja3g3387 445 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 342 439 IPR036598 -
Lja3g3387 445 SMART CRAL_TRIO_N_2 118 143 IPR011074 -
Lja3g3387 445 SUPERFAMILY CRAL/TRIO N-terminal domain 77 158 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3387 Lja-Chr3 66772900 66775813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3387 122 320 Acyl Lipid Metabolism Gene Families AT1G55840 25.352 1.63e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3387 - - gmx:100809944 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3387 3 66772900 66775813 Lja3g3387 3 66772900 66775813 ECH
Lja1g3325 1 41361292 41363601 Lja3g3387 3 66772900 66775813 PCT