Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3325 ATGGACACCTCAACATCTCCCTCACCCTCACCTTCTTCCAAGTCCATTCTCAACATCACCACACCCTTCCAAAACCTTCCAGATGCTTCCCCAAGGCCACACAAGAAAAGCATATTCACCACATTAATGGAAGCCACCACCACTTCCTTCAAAGAAGACACCTACTTGGTGTCCCACCTCAGAAATTCAGAGAAAAAGGCACTGCAAGAGTTCAAAGACAAGCTTTTGGCTTCTGGGGAGGTCAACAATGCTTCAATGTGGGGTGTTACTCTGCTTAATGGTGATGATAGAGCTGATGTGTTGCTCTTGAAGTTCCTTAGAGCCAGGGACTTCAGGGTTTGTGATGCTCTCAACATGCTCCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGGTGCTGACAACATTGTAGATGAGGAATTGGGGTTCAAAGAGCTTGAAGGGGTTGTAGCTTGTACTCAAGGGTATGATAGAGAGGGGCACCCTGTGTGCTACAATGATTATGGGGTGTTCAAAGACAAGGAAATGTATGAGAAGTTTTTTGGGGATGAAGAGAAGCTGAAGAAATTTTTGAGGTGGAGGGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTCCATTTCAAGCCTGGCGGGGTCAATTCTTTGATTCAGGTTACTGATCTTAAGGATATGCCCAAGAGAGAGCTCAGGGTTGCTTCTAATCAGATTCTCTCTCTGTTCCAAGACAACTATCCAGAAATGGTTGCAAGGAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAGCCCATTTCTGACCCAAAGAACCAAGAGCAAGTTTGTGATATCTAAGGAAGGAAATGCTGCTGAGACACTCTACAAATTTGTAAGGCCTGAGGAAATTCCTGTAAGGTATGGAGGACTGTGTAGACCCAGCGATTTGCAGAATGGTCCCCCAAAACCAGCTTCTGAGTTCACAGTTAAAGGAGGAGAGAAAGTGAACATACAAATTGAAGGAATTGAGTATGGTGCAACTATCACATGGGACATTGTGGTTGGAGGCTGGGACTTGGAATACAGTGCTGAGTTTGTCCCAAATGCAGAAGGTAGCTACACCATAGCAGTTGAGAAGGCAAGGAAGATTGAGGCCTCAGAAGAAGCAATCCATAACTCATTCACATTAAAAGAAGCAGGAAAAATGGTGCTCTCAGTAGATAACTCTGCTTCCAGGAAGAAGAAAGTTGCTGCTTATCGCTACATTGTCCGCAAATATAGCACACAGTCTGTATAA 1284 0.4424 MDTSTSPSPSPSSKSILNITTPFQNLPDASPRPHKKSIFTTLMEATTTSFKEDTYLVSHLRNSEKKALQEFKDKLLASGEVNNASMWGVTLLNGDDRADVLLLKFLRARDFRVCDALNMLLKCLAWRKEFGADNIVDEELGFKELEGVVACTQGYDREGHPVCYNDYGVFKDKEMYEKFFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFVRPEEIPVRYGGLCRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEYGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKARKIEASEEAIHNSFTLKEAGKMVLSVDNSASRKKKVAAYRYIVRKYSTQSV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3325 427 Pfam CRAL/TRIO, N-terminal domain 67 121 IPR011074 -
Lja1g3325 427 Gene3D - 132 317 IPR036865 -
Lja1g3325 427 PANTHER PATELLIN-1 20 423 IPR044834 GO:0008289
Lja1g3325 427 Pfam CRAL/TRIO domain 146 305 IPR001251 -
Lja1g3325 427 PANTHER PATELLIN-6 20 423 - -
Lja1g3325 427 SMART sec14_4 137 308 IPR001251 -
Lja1g3325 427 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 154 311 IPR001251 -
Lja1g3325 427 SMART CRAL_TRIO_N_2 98 123 IPR011074 -
Lja1g3325 427 SUPERFAMILY CRAL/TRIO domain 143 308 IPR036865 -
Lja1g3325 427 Gene3D - 55 129 - -
Lja1g3325 427 CDD SEC14 142 306 IPR001251 -
Lja1g3325 427 Gene3D GOLD domain 318 419 - -
Lja1g3325 427 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 322 423 IPR036598 -
Lja1g3325 427 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g3325 427 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g3325 427 SUPERFAMILY CRAL/TRIO N-terminal domain 57 139 IPR036273 -
Lja1g3325 427 ProSiteProfiles GOLD domain profile. 305 421 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3325 Lja-Chr1 41361292 41363601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3325 102 277 Acyl Lipid Metabolism Gene Families AT5G47730 29.348 4.54e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3325 - - qsu:112015166 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3325 1 41361292 41363601 Lja1g3325 1 41361292 41363601 ECH
Lja1g3325 1 41361292 41363601 Lja3g3387 3 66772900 66775813 PCT