Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3303 ATGAAAGCCCTCACCAGCTATGGTTCTAAGGCCATTTCTGAGAGGCTAGGAGTTCAAGTCCTACATGTTTCTGATAGACCCGAGTTTTGTTTCTCCCTTCGTTTCAGGAATGATAGAAAAGGCTCCAACTTTTGGCTCCTCAAACTGGTCCAAAACAAGGGTTATTACCCGGTTCATGCTCTGCCAGCAAAAACCCAGGTGGACTTGGAAGCTGCGGAGCCACAAGTTGCACAAAGTGAACAAATAAATGAATCAAAGTTTGTTCGCGTAGCATTTCAGTTACAAAAAGATTGCGACTTTGGCGAACAGTTTCTAATAGTTGGGGATCATCCTATACTTGGTTCCTGGGAACCTACTGAAGCGTTGCCAATGACATGGTCTGATGGGCATGTATGGACTATTGAGCTGGATATGCCTGTTGGAGAGTCAATCCTGTTCAAATTCATACTGAAAGGAAAAGAAGGTGATATTATATGGCAGCCAGGTTCGGATCGAGTTATCAACACTTGGGAAACTATGAATAAGATCATAGTTTTTGAGGATTGGGAGAATGCTGAACTTCAGGAAATAATAGAGGAAGATCAATTTTCTCAATCAAATGAGAAACCCCAGGATAACTCAGAAGTGCTAATTTCTGCTGAAATTTTGAATAATCCTCCAGAGGCACTGGAATCAAATGAGAAACCCCAGGATAACTCAGAAGTGCTAATTTCTGCTGAAATTTTGAATAATCCTCAAGAGGATCTGGAATCAAATGTATCCCAAACATCTGGCATTCAAGATATACAAACTGATGCAGAGGAGAAACCACTTGCTGAACCAGTCCTGCAACATCTCACTAGTGTTAGTAGCTCTTCCTCAATTGAGAAGCCAATGGCCATGGTTGCAGAAAATATAGATTCCTCTGAGGATTTCGTGGAAAGTACAAGCCACCAAAAGGATATAAGGAATATGATTCAACAGAATGAAGAATCTGCGAATAGTCCCAGAAATGATGTTGTAATACATCATCTTGGAAGGAATGGAAACGCTGCACCACTTAAGAATCAGGAAGGGACGATTGCGGAGCGAAGCTTATTTGATTTTGAAGGAGGTCCTGTTCTTGTACCTGGCTTAGTCCCGCCAAGTGAAGAAGCTGGCCCAGGTGAAGTTGAAGAAAAGACTACCATGGGCCCTTCAGTTGAAGCTTTAGAAACTCAGGATCAGAATATACCAGAGTTCAGTGAGGAGCAAGAATTGAATGATGACAAACCTCAGGAGGTAAATGCAACAATCCATGATGACCCAGAGCTGCTTGACAATGAGCATGAAGAGCAGTTTCATTTAGCCTCAGCAATGGAAGATAGATCAAGGTCCGACCCAGTTTATGGTAATCCTTTGCAAAATGACATCCAGTGGGGCCGTGAAAAGTTCAGCAAGGAGCAAGAATCTGATGATGGAAAACGTCAAGAGATAAATGGAACAATCCATGATGAGCCAGAGCAGCTAGACAATGAGCATGAAGAACAGTTTCAATTAGCTTCAGCAATGGAAGATAGGTTGAATTCCAAGCCAGTTTATGGTAATCCCTTGCAAAAAGACATCCAGTGGGGCCGTGAAACGGTTAAGAAGTTTCTAACAGTGCTTGGATTCCTTTGA 1638 0.4231 MKALTSYGSKAISERLGVQVLHVSDRPEFCFSLRFRNDRKGSNFWLLKLVQNKGYYPVHALPAKTQVDLEAAEPQVAQSEQINESKFVRVAFQLQKDCDFGEQFLIVGDHPILGSWEPTEALPMTWSDGHVWTIELDMPVGESILFKFILKGKEGDIIWQPGSDRVINTWETMNKIIVFEDWENAELQEIIEEDQFSQSNEKPQDNSEVLISAEILNNPPEALESNEKPQDNSEVLISAEILNNPQEDLESNVSQTSGIQDIQTDAEEKPLAEPVLQHLTSVSSSSSIEKPMAMVAENIDSSEDFVESTSHQKDIRNMIQQNEESANSPRNDVVIHHLGRNGNAAPLKNQEGTIAERSLFDFEGGPVLVPGLVPPSEEAGPGEVEEKTTMGPSVEALETQDQNIPEFSEEQELNDDKPQEVNATIHDDPELLDNEHEEQFHLASAMEDRSRSDPVYGNPLQNDIQWGREKFSKEQESDDGKRQEINGTIHDEPEQLDNEHEEQFQLASAMEDRLNSKPVYGNPLQKDIQWGRETVKKFLTVLGFL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3303 545 SUPERFAMILY Starch-binding domain-like 85 179 IPR013784 GO:0030246
Lja3g3303 545 PANTHER BLR6771 PROTEIN 1 430 - -
Lja3g3303 545 CDD CBM20 89 182 - -
Lja3g3303 545 SMART CBM_20_2 87 177 IPR002044 GO:2001070
Lja3g3303 545 MobiDBLite consensus disorder prediction 444 505 - -
Lja3g3303 545 MobiDBLite consensus disorder prediction 467 505 - -
Lja3g3303 545 Pfam Starch binding domain 88 174 IPR002044 GO:2001070
Lja3g3303 545 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 82 184 IPR002044 GO:2001070
Lja3g3303 545 Gene3D Immunoglobulins 85 183 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3303 Lja-Chr3 64810353 64815467 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3303 - - lja:Lj0g3v0021379.1 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3303 3 64810353 64815467 Lja3g3303 3 64810353 64815467 ECH
Lja1g3408 1 42468765 42472301 Lja3g3303 3 64810353 64815467 PCT