Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3408 ATGGCCATTGTTGACATGCTAGGATCTCACTCTCCTAGAACTTCTGCTTATGTTTCCAACAGATCAGAAATGTTGCTATCCCCAAATCACCAGAAAGGCTCCAACTTTCAGTTCCTCAAATTGGCACAAAACAAGCGCATTTACCCTGTTCATGCTCTGCCAGCCAAAACCCAGGTGGACTTGGACTTGGACATAGAGATGGACATGGACATGGACACCGGGGATGTTCAAGCTCAACAAGCAATGGCACCCAAGTTTATTCATGTCAAATTTCAGCTCCAACGCAACTGTAATTTTGGGGAACAATTTCTGATGGTTGGAGATGATCCTGTGTTTGGTTCATGGGACCCTTCAAAGGCATTACCAATGACCTGGTCAGATGGGCATGTTTGGACTGTAGAGCAGAACATTCCTGCTGGGAAGTCAATCCAATTCAAATTCATCCTGAAAAGAAAAGGAGGTGAAGTTTATTGGCAGCCAGGGTCAGATAGAACTCTGCACACTTGGGAAAACATGAACAGAATCACTATTTGTGAGGATTGGGAGAATGCTCAGCTTCAGAAGATAATTGAGGAAGGTCAACCTACAGCTTCCCCAAGCTCAATTAATCTTGCTAAAAACAATAATGCAATGGAGATGGCGGCGACGCCGCTTGCTAGTAACATTCCATCTCAAATGATGGAGCCTGTGACAACCATTGTAGCTGAGAATGTAGCTTCCTCTAATGAGCACATCAAGACTACAACCAGCACCAAGACTAAAAAGAACATGATCCCCTTGAATGCTGCAAATGTGTCATTGTATTTAGGGTACATCTGTGCTCCGAACCAGTCGACCTTATCTCTCGGTGAGGGTGGTCCACCAGTTTGGGTGGAACACTATATTTGA 888 0.4459 MAIVDMLGSHSPRTSAYVSNRSEMLLSPNHQKGSNFQFLKLAQNKRIYPVHALPAKTQVDLDLDIEMDMDMDTGDVQAQQAMAPKFIHVKFQLQRNCNFGEQFLMVGDDPVFGSWDPSKALPMTWSDGHVWTVEQNIPAGKSIQFKFILKRKGGEVYWQPGSDRTLHTWENMNRITICEDWENAQLQKIIEEGQPTASPSSINLAKNNNAMEMAATPLASNIPSQMMEPVTTIVAENVASSNEHIKTTTSTKTKKNMIPLNAANVSLYLGYICAPNQSTLSLGEGGPPVWVEHYI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3408 295 CDD CBM20 89 181 - -
Lja1g3408 295 Gene3D Immunoglobulins 85 182 IPR013783 -
Lja1g3408 295 PANTHER OS01G0856900 PROTEIN 30 256 - -
Lja1g3408 295 SUPERFAMILY Starch-binding domain-like 84 178 IPR013784 GO:0030246
Lja1g3408 295 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 81 183 IPR002044 GO:2001070
Lja1g3408 295 PANTHER ALPHA-AMYLASE 30 256 - -
Lja1g3408 295 SMART CBM_20_2 86 178 IPR002044 GO:2001070
Lja1g3408 295 Pfam Starch binding domain 87 173 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3408 Lja-Chr1 42468765 42472301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3408 - - aprc:113862431 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3408 1 42468765 42472301 Lja1g3408 1 42468765 42472301 ECH
Lja1g3408 1 42468765 42472301 Lja3g3303 3 64810353 64815467 PCT