Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3417 ATGGCAAATGAATTTGTCGGATTCACTCTCTCTCTTATTCCAAATTCCAAAGGTTGTTATCCCTTATTTTTATTATGTAACATGTTGAGCATCATGAACACTATCCCTATAAACCCACCTTCTTGTTCTGCATACCCTCCTAACTCTGCTAGATTTCAACATTTTCGATCGTTCGGAGCAAAACCCATTATTCTTTCTTGCAGAGGAGCACGATTGTGCTCTTTTCCGGGGTCAAAAACTGTCAAGGGTAGAAAAAGATTGGTGCTTCATGTCACAAACGCGGCCATGGCAGAGGTTCACTCTCAATCTCATCATGAAGAGGAAGAGAAGGAAGAGGTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTTTCTTGACTCAAGTACTGAGAACAATTCAAGGCCTCGTCGAATTGCTCTATTTGTTGAACCCTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGGTTTCAGAATTTTATTAAATGCCTTCGTGAAATGGGAGACGAGGTGATGGTTGTGACAACACATAAAGGAGTGCCCCAGGAGTTTTATGGAGCCAAATTAATCGGATCTTGGAGCTTTCCTTGCCCTTTGTATCAGAAAGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTTAAGCCAGACATAATACATGCATCATCTCCAGGCATTATGGTTTTTGGTGCTCTTATCATTGCAAAACTTCTGTGTGTTCCTATTGTCATGTCGTATCATACTCACGTCCCCGTATACATTCCAAGATATACATTTAGTTGGCTGGTGAAACCCATGTGGTTGATCATAAAATTTCTTCATAGAGCAGCTGATCTGACTCTGGTGCCATCTGTTGCAATTGGGAGGGATCTTCAAGCAGCTAAAGTAACAGCAGCTAACAAAATCCGTCTCTGGAGCAAGGGTGTTGATTCTGAAAGTTTCCATCCTCGATACCGCTCACATGAAATGCGATTAAGACTAAGCAATGGTGAACCCGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGGGTCATGGATAGGCTTCCTGAAGCGCGAATTGCTTTCGTTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAAATGTTTGAAGGCATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAACTCTCTCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGATTTGTTGTTTTGGAGGCCATGTCTTCAGGGCTAGCCGTTGTGGCAGCGCGTGCCGGAGGCATTCCAGACATAATTCCGGCTGATCAAGAGGGCAAAACTGGTTATCTTTATCATCCTGGAGATCTCGAAGACTTCTTGAGTAAATTGAAACCCCTTTTGCTCAGCCAAGAGCTGAGACAAACTATGGGAAAAGCTGCTCGTGACGAGATGGAGAAGTTTGATTGGAAGGCAGCCACCCGAAAAGTTCGCAATGAACAATACAATGCCGCCATTTGGTTCTGGCGCAAGAGAAGGGCTCAACTGTCAAGACCCTTACAATGGCTGGGTAAACGTTTTTCCACATCACCCCAAGTCAATTAA 1638 0.4377 MANEFVGFTLSLIPNSKGCYPLFLLCNMLSIMNTIPINPPSCSAYPPNSARFQHFRSFGAKPIILSCRGARLCSFPGSKTVKGRKRLVLHVTNAAMAEVHSQSHHEEEEKEEVPSSSSSSSSSSSSAFLDSSTENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPCPLYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSVAIGRDLQAAKVTAANKIRLWSKGVDSESFHPRYRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFVGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGLAVVAARAGGIPDIIPADQEGKTGYLYHPGDLEDFLSKLKPLLLSQELRQTMGKAARDEMEKFDWKAATRKVRNEQYNAAIWFWRKRRAQLSRPLQWLGKRFSTSPQVN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3417 545 MobiDBLite consensus disorder prediction 115 134 - -
Lja1g3417 545 Gene3D Glycogen Phosphorylase B; 319 499 - -
Lja1g3417 545 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 142 509 - -
Lja1g3417 545 MobiDBLite consensus disorder prediction 100 114 - -
Lja1g3417 545 Pfam Glycosyl transferases group 1 342 494 IPR001296 GO:0016757
Lja1g3417 545 MobiDBLite consensus disorder prediction 98 134 - -
Lja1g3417 545 Pfam Glycosyltransferase Family 4 159 322 IPR028098 -
Lja1g3417 545 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 43 544 - -
Lja1g3417 545 CDD GT4-like 141 513 - -
Lja1g3417 545 Gene3D Glycogen Phosphorylase B; 156 503 - -
Lja1g3417 545 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 43 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3417 Lja-Chr1 42611742 42619596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3417 46 455 Glycosyltransferase AT5G01220 70.218 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3417 K06119 - gmx:100807850 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3417 1 42611742 42619596 Lja1g3417 1 42611742 42619596 ECH
Lja1g3417 1 42611742 42619596 Lja3g3297 3 64524468 64529466 PCT