Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3104 ATGGAGTCCATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAATCCTTCACCCGTGAACAGTTCAAGCTTCAAGGCCACACCGTTCACCTCTCCAATTTAGATATCGACGGCGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTCGCCTCCGCCAGAGTTGGCAAACTCGAGATAACGCTTCCGTCGGTGAGTAATGTGCAAACGGAGCCGATTGTTGTGGAAATTGATAGACTCGATCTGGTTCTGGAGGAGAATTCGGAGTCTGATGAATCTCCAAGTCAAAACAGTTCTTCTACGCCGTCGGCGGCCGCGGCTAAAGGAAGCGGTTATGGTTTTGCTGATAAGATTGCAGATGGCATGACTATACAAATACATACGGTTAATCTATTACTTGAAACCCGTGGTAGTTCTCGTCGCCAAGGGGGAGCAGCATGGGCACCACCTATGGCATCTATTACTGTACGCAACCTTTTGCTGTATACCACAAATGAAAACTGGCAGGTTGTTAATCTTAAGGAAGCACGGGAATTCTCCAGTAACAAGAAGTACATATATGTCTTCAAAAAATTGGAATGGCAATCTTTGTCTATTGATCTTTTGCCTCATCCTGACACGTTCACAGATCCCACATTTGACCATTCTCAAGATGGATCAAACCTGAGGGATGATGATGGTGCAAAACGAGTATTCTTTGGAGGAGAACGTTTTATAGAAGGAATATCGGGAGAAGCATATATAACAATTCAGAGAACTGAGTTGAACAGTCCTCTCGGACTTGAGGTTCAATTGCACATAAATGAAGCTGTTTGCCCTGCATTAAGTGAACCAGGACTACGTGCATTTCTCCGCTGTATGACAGGAGTATATGTTTGTCTAAACCGAGGTGATGTTGATTTCAAGGCTCAGCAGCTATCCACTGAAGTGGCTGGGCGCTCTCTTGTCTCAATTGTAGTAGATCATATATTTCTTTGCATTAAAGATACTGAGTTCCAGCTTGAGCTTTTGATGCAGTCCCTCTTTTTTTCTCGCGCCAGTCTTTCTGAAGGAGATAATGACAAGAACTTGACCAGGATTACAATTGGTGGATTAATTTTAAGGGACACCTTTTCTTGCCCTCCATGTGCCTTAGTGCAACCATCATTGCAAGCTGTCACAGGAAATACTTTTCATGTGCCAGAATTTGCCAAAAGCTTTTGCCCTCCAATATATCCTTTACAAGAGCAGCAATGGCAGTTGACTGAGGGAACCCCTCTAATATGCCTCCATGCTCTTCAGACCATGCCTTCTCCACTCCCACCATCCTTTGCTTCTCAAACTGTTATTGACTGTCAGCCTCTTATGATTCATCTGCAGGAAGAATCATGTCTGAGGATATCCTCTTTGTTAGCTGATGGAATAGTTGTCAGCCCTGGTGACATTTTACCAGATTTCTCATTGAAATCTTTTATTTTCTCTCTCAAGGGACTGGATGTTACTGTTCCTTTTACTGACATGGACAATACAGCCCAGACCTCCTTTGCTGGAGCAAAGCTTAATATCGAAAACCTGTTCTTTTTAGACTCACCCACATTGAAACTAAGAATGCTGAACCTTGAGAAGGATCCTGCTTGCTTCTGTCTTTGGGAAGGTCAACCGATTGATGCTAGCCAGAAGAAGTGGACTGCCAGAGCATCCCAGCTTACTTTGTCTCTGGAAGCATCTACCGGTATATCCAGACATCAAAATTCCCATGGACAGACTGCACAATTGTGGAGATGTGTTGACCTGAAAGATACTTGCATTGAAGTAGCTATGGCAACTGCAGATGGCAGTCCATTGTTAGAAGTTCCTCCTCCAGGGGGTATTGTCAGGGTTGGAGTTGCTTGCGAACAGTATTTGTCCAACACTTCTGTGGAACAGTTATTTTTTGTCCTAGATCTCTACGCTCATTTTGGGAGAATTAGTGAAAAGATAGCAATGGCTGGAAAAAGGAAACAATTGGAGGACATTAGGGGCAAATCATTTAATGGAAAGCTGGTGGATAAGGTTCCTAGTGACACTGCTGTGAGTTTAGCAGTGAAATACCTCCAACTTCGATTTCTGGAGTCTTCTCCAGTGAATGTTGAGGGTATGCCTTTAGTGCAATTCGTTGGAGATGATCTGTTAACTAGTGTCAAACATAGAACCCTTGGTGGGGCTATTGTTGTTTCATCTACTTTACGTTGGGAGAGTGTTGAGATATGTTGTGTGGATGCTGAGGGGCACTTGTCATATGAAAATGGCTCATTCTTGAGTTCTAGCAAAAATGCTCCCTCTCCAATTGATGATGGATATCCTCAACTAAGAGCTGTTTTCTGGGTGCACAAGAATGAGAAACATATATTGAATGCGAACGCTCATCCAGTCCCGTTTCTGGACATAAACATGGGTCATGTCATACCATTACATGAACAAGACATGGAGTCTCATAGTTTGAATGTCTCAGCTTCTGTATCTGGGGTTCGTCTTGCTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAAGTTTGGAATACTTGGGCCTGATGGAGCCCCTGGGGCTGGTCTTTGTAAAGGCTTGGAAAATTTACAAAAAGGACCATTATCAAAACTATTTAAGACAACTCCTCTAAGTGGTGATGATTCAGAAGATGGTATGAAAGCAGTGGGAGAAACCAGTTTCCCACACTTGAAGAAGCCAGATGACGTGGATGTAACTATAGAATTGAGAGGCTGGTTGTTTGCTCTTGAAGGTTCGCAAGATATGGCTCAAAGGTGGTGGTTCTCTAGCCTTGAAGATGAAGACAGAGAAGAGAGGTCTTGGCACACATCTTTCTCTGGTTTGCGAGTAAATGCAAAAAGCAACCCAGAAAATGTTTCAGATGGAAAAGCACAATTGCGCAGAATACAGCAGAGTCCAGTAGAGCTGGTTACGGTTGGAGTTCAAGGGCTACAAATCATGAAGCCTCATACCCAAAAAGACACACCTTCAGCAATGCCAATTGCAAATGGGGTTAAAGAATTTACTGACACAGTTGGAGGAATTGGTCTTGAAGCTCGCTTGATATTATGTGAGGAGAACTTTGATGATGAAATGACTAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAGCCGATTGAGGCTGTTGTAACCAGGGATGAGCTTCAGCACCTCACTTCTTTGTGCAAATCTGAACTCGATTCAATTGGCCGGATAACTGCTGGAATTATACGATTGTTGAAGCTTGAAGGTTCTGTTGGTCAGTCTGTAATAGATCAACTCGGCAACCTAGGAAGCGAAGGCATTGACAGGATTTTCTCTTCTGAAAAGGTTAGTAGAGACGGTAGTGTGGGTAGTAGAGGACTTTCTCCATTCGCATACCAGATAAACGAAGAACCGAACAAAACTACAGAACAAACTTTCACTTTGCTTGAGGAAGCAGTTTCAGATTCACAGGCTAAACTTAATGATTTAATCAATGATATCGGTACTTCAGCAGAGTCTTCTTCATCTCAACGCCTTACCCTCATCACCCTGAGTCAAAAGATAGGGACTATGCAGGACTTATTGACGCAATTACGGAATCAACTTTAA 3624 0.436 MESILGRALEYTLKYWLKSFTREQFKLQGHTVHLSNLDIDGDALHSSVGLPPALNVASARVGKLEITLPSVSNVQTEPIVVEIDRLDLVLEENSESDESPSQNSSSTPSAAAAKGSGYGFADKIADGMTIQIHTVNLLLETRGSSRRQGGAAWAPPMASITVRNLLLYTTNENWQVVNLKEAREFSSNKKYIYVFKKLEWQSLSIDLLPHPDTFTDPTFDHSQDGSNLRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRAFLRCMTGVYVCLNRGDVDFKAQQLSTEVAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLFFSRASLSEGDNDKNLTRITIGGLILRDTFSCPPCALVQPSLQAVTGNTFHVPEFAKSFCPPIYPLQEQQWQLTEGTPLICLHALQTMPSPLPPSFASQTVIDCQPLMIHLQEESCLRISSLLADGIVVSPGDILPDFSLKSFIFSLKGLDVTVPFTDMDNTAQTSFAGAKLNIENLFFLDSPTLKLRMLNLEKDPACFCLWEGQPIDASQKKWTARASQLTLSLEASTGISRHQNSHGQTAQLWRCVDLKDTCIEVAMATADGSPLLEVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYAHFGRISEKIAMAGKRKQLEDIRGKSFNGKLVDKVPSDTAVSLAVKYLQLRFLESSPVNVEGMPLVQFVGDDLLTSVKHRTLGGAIVVSSTLRWESVEICCVDAEGHLSYENGSFLSSSKNAPSPIDDGYPQLRAVFWVHKNEKHILNANAHPVPFLDINMGHVIPLHEQDMESHSLNVSASVSGVRLAGGMNYAEALLHKFGILGPDGAPGAGLCKGLENLQKGPLSKLFKTTPLSGDDSEDGMKAVGETSFPHLKKPDDVDVTIELRGWLFALEGSQDMAQRWWFSSLEDEDREERSWHTSFSGLRVNAKSNPENVSDGKAQLRRIQQSPVELVTVGVQGLQIMKPHTQKDTPSAMPIANGVKEFTDTVGGIGLEARLILCEENFDDEMTNWEVENLKFSVKQPIEAVVTRDELQHLTSLCKSELDSIGRITAGIIRLLKLEGSVGQSVIDQLGNLGSEGIDRIFSSEKVSRDGSVGSRGLSPFAYQINEEPNKTTEQTFTLLEEAVSDSQAKLNDLINDIGTSAESSSSQRLTLITLSQKIGTMQDLLTQLRNQL* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3104 1207 PANTHER UNCHARACTERIZED 1 1206 IPR026728 -
Lja3g3104 1207 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1206 - -
Lja3g3104 1207 MobiDBLite consensus disorder prediction 95 112 - -
Lja3g3104 1207 MobiDBLite consensus disorder prediction 92 112 - -
Lja3g3104 1207 Pfam N-terminal region of Chorein or VPS13 1 103 IPR026854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3104 Lja-Chr3 59123594 59133576 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3104 - - gmx:100803142 1943.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3104 3 59123594 59133576 Lja3g2487 3 31649725 31651491 PCT