Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2487 ATGGTTTTGATTGAGAATCAGAGGCAATTTATTGATGGTGTGTGTGCAATTATTGTCAAGGGTCATTGGGGCAATCTCTTGAAGGTGAACAATGCCCCTGTTCTCTCTTCCACTACCATTCACCAAGTGCTTTTGCAGCTCTCACTCAATGGTTATGGCCCCTCTATTTCCTTCCCATTCTTCAAATGGGTTGAATCCACCCCACATTACACTCACTCCTTGCAATGCTCATGGGCCATGATTCAAATACTTGCAAAATATAAGCATTTCAAAACTGCACAACAGATGCTCGACAAAATTGCCCACAGAGATTTTCTCTCATCACCTTCAGTTTTGAGCTCGCTGGTGAGGATTCACGATGACCCGGAAGTTAATTCACAAGTTTTGAGCTGGCTTGTGATACATTATGCAAAGTCAAGGATGACCCAGGATGCCCTCCAAGTTTTTGAGCAGATGAGGTTGTACCAACTCAAGCCTCATTTGCCTGCTTGTACTGTGCTTTTGAGTTCCTTGTTGAAGGATGGGACTACCAACGTGGTGTGGAAGATTCACAAGAGACTGGTTCAAGATGGGGTTGTCCTCAATATCTATATTTACAATTGTTTGATTCATGCTTGTTCTAAATCTAGAGATGTGGAGAGGGCAAAACAGTTACTGAATGAGATGGAGGAAAAGGGTGTGGTTCCTGATATTTTCACATACAATACTTTGATATCATTATATTGCAAAAAAGGTATGCACTATGAGGCTTTATCCATCCAGGACAAAATGGAAAGAGAGGGAATAAATCTTGATATTGTTAGTTACAATTCTCTTATTTATGGATTTTGCAAAGAAGGTAGGATGAGAGAAGCTACGAGGATGTTTAGCGAAATAAAAGATGCCACTCCCAATCATGTGACATATACTACATTGATAGATGGTTACTGTAAAGCAAATGAATTGGATCAAGCTCTGAAAGTACGTGAGCTGATGGAGGCTAAGGGATTGTACCCTGGAGTTGCTACTTATAATTCAATTCTGCGCAAGCTGTGTCAAGATGGCAGGATAAGGGATGCTAACAAACTCTTGAATGAGATGAGTGAAAAAAAAGTTCAAGCTGACAATATCACGTGCAACACGCTGATTAATGCTTACTCCAAGATTGGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAATCTGGGCTAAAGCCTGATCCCTTTACATATAAGGCACTGATTCATGGGTTCTGCAAAATGGATGAGCTGGAAAGCGCCAAGGAGCTACTGTTTGGCATGCTTGATGCCGGATTTACCCCCAGTTATTGCTCGTATTCATGGATAGTAGATGGATACTGCAAGAAAGATAATGTGGATGCAATTTTAGCACTTCCAGATGAGTTTCTGAGTAAAGGTCTTTGTCTTGATGCTTCAGTATACAGGGCACTAATTAGAAGGTTATGCAAGATAGAACAGATTGAATGTGCTGAAAAGTTATTCTATCATATGGAGGGAAATGGTATTTCTGGCGACAGTGTTATTTACACTAGTCTCGCCTATGCTTACTGGAAATCAGGCAAAACAAGTGTTGCCTCAAATGTTTTAGAAGAGATGGCTAAGAGGAGGTTGATAATCACAGCGAAAATCTATAGCTGCTTTAGTGTTCCTGATGGTCATGGTGAAAACAAAGTGTCACAGATGTTCTGGGATCATGTGGTGGAAAGGGGTCTGATGTCAAGAAATACAATGAGGAAAATACAGCAGATGCTGATATGA 1767 0.4041 MVLIENQRQFIDGVCAIIVKGHWGNLLKVNNAPVLSSTTIHQVLLQLSLNGYGPSISFPFFKWVESTPHYTHSLQCSWAMIQILAKYKHFKTAQQMLDKIAHRDFLSSPSVLSSLVRIHDDPEVNSQVLSWLVIHYAKSRMTQDALQVFEQMRLYQLKPHLPACTVLLSSLLKDGTTNVVWKIHKRLVQDGVVLNIYIYNCLIHACSKSRDVERAKQLLNEMEEKGVVPDIFTYNTLISLYCKKGMHYEALSIQDKMEREGINLDIVSYNSLIYGFCKEGRMREATRMFSEIKDATPNHVTYTTLIDGYCKANELDQALKVRELMEAKGLYPGVATYNSILRKLCQDGRIRDANKLLNEMSEKKVQADNITCNTLINAYSKIGDLKSALKFKNKMLESGLKPDPFTYKALIHGFCKMDELESAKELLFGMLDAGFTPSYCSYSWIVDGYCKKDNVDAILALPDEFLSKGLCLDASVYRALIRRLCKIEQIECAEKLFYHMEGNGISGDSVIYTSLAYAYWKSGKTSVASNVLEEMAKRRLIITAKIYSCFSVPDGHGENKVSQMFWDHVVERGLMSRNTMRKIQQMLI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2487 588 Pfam PPR repeat family 297 346 IPR002885 -
Lja3g2487 588 Pfam PPR repeat family 368 416 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 476 508 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 197 231 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 267 294 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Lja3g2487 588 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Lja3g2487 588 Gene3D Tetratricopeptide repeat domain 177 294 IPR011990 GO:0005515
Lja3g2487 588 Gene3D Tetratricopeptide repeat domain 430 584 IPR011990 GO:0005515
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Lja3g2487 588 Pfam PPR repeat 261 292 IPR002885 -
Lja3g2487 588 Gene3D Tetratricopeptide repeat domain 28 176 IPR011990 GO:0005515
Lja3g2487 588 Gene3D Tetratricopeptide repeat domain 364 429 IPR011990 GO:0005515
Lja3g2487 588 Gene3D Tetratricopeptide repeat domain 295 363 IPR011990 GO:0005515
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lja3g2487 588 PANTHER ATPASE EXPRESSION PROTEIN 3 6 584 - -
Lja3g2487 588 Pfam PPR repeat 136 153 IPR002885 -
Lja3g2487 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Lja3g2487 588 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 584 - -
Lja3g2487 588 Pfam Pentatricopeptide repeat domain 183 243 IPR002885 -
Lja3g2487 588 Pfam Pentatricopeptide repeat domain 496 540 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2487 Lja-Chr3 31649725 31651491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2487 187 551 Glycosyltransferase AT1G05670 34.060 2.94e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2487 - - gmx:100804589 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3104 3 59123594 59133576 Lja3g2487 3 31649725 31651491 PCT