Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2822 ATGTCGGGCTTACTTAATTCTTCTCTGAACGGATCTGCGTCAAATCTTCCAGATGGTACGGGGCGGTCTTTTGCGACGTCTTTCTCTGGTCAGTCGGGTGTAGCCTCCCCAGTTTTTCATCACTCTGGAACTATTCAGGGGTTGCACAATATTCACGGGAGCTTTAATGTTCCCAACATGCCGAATACACTTACATCAAGAAACTTAACAATAAATCCTACTGGAGGGGTTCAACAACCTACAGCGAATCTTTCTAGTGGAAGATTTGCGTCAAATAATCTACCAGTTGCTTTGTCACAGCTTTCTCATGGAAGTTCCCATGGACATTCAGGAGTCAACAGTAGAGGAGGTATAAGTGTTGTCGGAAACCCTGGATTTAATACTAGCTCAAATGGAGTTACTGGTTCTATTCCTGGGATTCTTCCAACTTCTGCTGCAATTGGTAACAGAAATGCTGTTCCAGGGTTGGGAGTATCCCCAATTTTGGGAAATGCAGGTTCTCGAATCACAAGTTCTATGGGAAATATGGTTGGTGGAGGGAACATTGGGAGGATAAGCTCTGGAGGATTGTCTGTTTCTGGTCTTGCTTCACGTTTAAATTTAAGTGGAGGCAGTGGATCTGGTGGCATAGGTGTACCAGGACAAAATCGTTTAATGAGTGGTGTGCTTCCACAAGGATCACCACAAGTAATGTCAATGTTAGGAAATTCTTATCCTAGTGCTGGAGGTCAGCTTTCACAAAGCCATGTTCAAGCATTAAATAACTTGAACTCTATGGGCATGTTGAATGATTTGCATTCCGGTGACAGTTCTCCTTTTGACATCAATGAGTTCCCTCAACTAACAAGTCGTCCTAGTTCTGCTGGTGGGTCTCAGGGACAGTTGGGTTCTTTACGAAAACAGGGTCTGGGAGGAGGCCCCATTGGCCAACAAAATCAAGAGTTTAGAATTGAAAGTGAAGATTTCCCAGCTTTACCAGGATACAAAGGCGGCAGTGCAGATTTTGCTATGGATATGCACCAAAAAGAACAACTTCATGACAATCCTGTGTCAATGATGCAATCGCAGCATTTCCCTATGGGTAGGTCTACTGGTTTCAGTTTGGGGGGATCATACTCATCACATCGTTCACAGCAACAACAGCAGCATGCTCCTTCAGTCAGTAGCAGTGGGGTCTCTTTTTCACCTGTAAACAGCCAAGATCTTCTCCACCTGCATGGATCGGATATTTTTCCATCTTCGCACTCTACTTATCATTCACAGACCAGCGGACCTCCTGGAATTGGAATAAGGCCTCCAAATTCTCCAAATACAATTTCTGGTGTGGGATCATATGACCAGCTCATCCAGCAATATCAACAACACCAGAACCAATCCCAGTTCCGCTTTCAGCAAATGTCAGCTGCAAATCAGTCTTTTAGGGATCAGAGCATGAAGTCTATGCAAACTGTGCAATCTAGTCCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGCGATCCTGATCTGACATCTCTTGCTCTCGGAGTTGATCTTACAACACTAGGGTTGAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTGCGTCTCCGTGGTCTGACGAACCAGCTAAGAGTGATCCAGAGTTCACTGTGCTACAATGTTATAATGCTAAACAACCTCCCGCCCTGCACCAAGGATATTTTTCAAAGTTCTCTGTGGAAACATTATTTTATATATTTTACAGCATGCCTAGAGATGAAGCACAACTATATGCAGCACATGAACTTTACAAACGGGGCTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCACTTGTCAAAACAAACGCCTACGAGAGAGGATCTTACCATTGTTTTGATCCAAGCAGTTTTAAAACGGTCCAGAAGGATAATTTTGTTCTCTATTATGAAATGGTGGAAAAGAGACCCCTGGCTTAA 1980 0.4338 MSGLLNSSLNGSASNLPDGTGRSFATSFSGQSGVASPVFHHSGTIQGLHNIHGSFNVPNMPNTLTSRNLTINPTGGVQQPTANLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGISVVGNPGFNTSSNGVTGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGSRITSSMGNMVGGGNIGRISSGGLSVSGLASRLNLSGGSGSGGIGVPGQNRLMSGVLPQGSPQVMSMLGNSYPSAGGQLSQSHVQALNNLNSMGMLNDLHSGDSSPFDINEFPQLTSRPSSAGGSQGQLGSLRKQGLGGGPIGQQNQEFRIESEDFPALPGYKGGSADFAMDMHQKEQLHDNPVSMMQSQHFPMGRSTGFSLGGSYSSHRSQQQQQHAPSVSSSGVSFSPVNSQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGIRPPNSPNTISGVGSYDQLIQQYQQHQNQSQFRFQQMSAANQSFRDQSMKSMQTVQSSPDPFGLLGLLSVIRMSDPDLTSLALGVDLTTLGLNLNSSENLHKTFASPWSDEPAKSDPEFTVLQCYNAKQPPALHQGYFSKFSVETLFYIFYSMPRDEAQLYAAHELYKRGWFYHKEHRLWFIRVPNMEPLVKTNAYERGSYHCFDPSSFKTVQKDNFVLYYEMVEKRPLA* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2822 659 MobiDBLite consensus disorder prediction 413 442 - -
Lja3g2822 659 MobiDBLite consensus disorder prediction 354 395 - -
Lja3g2822 659 MobiDBLite consensus disorder prediction 263 310 - -
Lja3g2822 659 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 658 - -
Lja3g2822 659 MobiDBLite consensus disorder prediction 456 475 - -
Lja3g2822 659 Pfam NOT2 / NOT3 / NOT5 family 531 652 IPR007282 GO:0006355
Lja3g2822 659 Gene3D - 481 659 IPR038635 -
Lja3g2822 659 PANTHER CCR4 NOT-RELATED 2 658 IPR040168 GO:0030015
Lja3g2822 659 MobiDBLite consensus disorder prediction 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2822 Lja-Chr3 43249443 43258047 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2822 K12605 - gmx:100806559 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2822 3 43249443 43258047 Lja3g2822 3 43249443 43258047 ECH
Lja3g2822 3 43249443 43258047 Lja3g0771 3 7811534 7820280 PCT