Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0771 ATGTCGGGGTTACTAAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGCGCTGGGCGGTCTTTTGCTACATCATTCTCTGGTCAGTCTGGTGCAGCCTCCCCAATTTTTCATCACACTGGATCTATTCAGGGGTTGCACAACATTCATGGGAGCTTTAATGTTCCCAATATGTCTGGTACACTCACATCAAGAAACTCAACAATAAATAATGTTCCGTCTGGGGGTGTTCAACAACCAACAGGGAGCCTTTCTAGTGGAAGATTTACATCAAACAATCTCCCTGTTGCACTTTCACAGTTATCTCATGGAAGCTCCCATGGACATTCTGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAATTGGTGGTTCTATTCCTGGGATTCTTCCAACATCAGCTGCGATTGGTAACCGAAATGCTATTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACAAGCTCCGTGGGAAACATGGTTGGAGGGGGAAACATTGGAAGGACTGGTGGAGGATTGTCTGTGCCTGGTCTTACTTCTCGTCTAAATTTGGGTGCAAACAGTGGATCTGGTGGTCTAAGTATTCAAGGACAGAATCGATTGATGAGTGGTATGCTTCCCCAAGGATCTCCACAGGTACTTTCAATGCTAGGAAATTCTTATCCTAGTGCTGGAGGCCCATTTTCCCAAAGCCATATTCAAGGAGTGAATAACTTGAACTCTATGGGGATGTTGAATGATGTGAATTCCAATGACACTTCACCTTTTGATATCAATGACTTCCCTCAACTGACCAGTCGTCCTGGTTCTGCTGGAGGGCCTCAAGGACAGTTGGGTTCGTTACAGAAACAGGGTCTTGGAGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCCTTCAAAATGAAGAATTCCCTGCTTTACCAGGATTCAAAGGTGGTAATGCAGATTATACTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTGTCAATGATGCAATCTCAGCATTTCTCTATGGGGAGGTCTGCTGGTTTCAGCTTGGGGGGAGCATATTCATCACATCGAGCACAACAGCAACAACAACATACTCCCTCCATCAGTAGTGGCAATGTTTCGTTTTCATCTGTTAACAATAACAACCAAGATCTTCTCCATCTTCATGGGTCGGATATTTTTCCATCTTCACATTCAGCCTATCATTCACAGACCAGTGGACCTCCTGGCATTGGATTAAGGCCTTTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATATGATCAGCTCATTCAGCAATATCAACAGCAGCAGAACCAGTCTCAGTTCCGTCTTCAAATGTCAGCTGTAAGCCAATCTTTTAAAGATCAGGGCATGAAGTCTATGCAAACTGCACAATCTACCCCAGATCCATTTGGTTTGCTTGGCTTGCTAAGCGTGATCAGGATGAGTGACCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTTGGGTTAAATTTGAATTCATCAGAGAATCTTCACAAGACTTTTGCATCTCCATGGTCTGAAGACCCAACTAAGGCTGACCCAGAGTTTAGTGTGCCACAATGTTATTACACTAAACAACCACCTACTCTTCATCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACATCTTTTACAGCATGCCCAAAGATGAAGCACAGTTATATGCTGCAAATGAGCTTAACAACAGAGGATGGTTTTATCACAAAGAGCTTCGTCTTTGGTTGATAAGAGTTCCCAACATAGAGCCACTGGTTAAAACAAACACACATGAGAGAGGATCATATCACTGTTTTGAACCAAACACATTCGAAATCATCCGCAAGGATAATTTTGTCCTACAGTATGAGTTGTTGGAAAAGAGACCTCATCTGCCTCAACATTGA 1995 0.4281 MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGSIQGLHNIHGSFNVPNMSGTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGIGGSIPGILPTSAAIGNRNAIPGLGVSPILGNAGPRITSSVGNMVGGGNIGRTGGGLSVPGLTSRLNLGANSGSGGLSIQGQNRLMSGMLPQGSPQVLSMLGNSYPSAGGPFSQSHIQGVNNLNSMGMLNDVNSNDTSPFDINDFPQLTSRPGSAGGPQGQLGSLQKQGLGVSPIVQQNQEFSLQNEEFPALPGFKGGNADYTMDMHQKEQLHDNAVSMMQSQHFSMGRSAGFSLGGAYSSHRAQQQQQHTPSISSGNVSFSSVNNNNQDLLHLHGSDIFPSSHSAYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQQQNQSQFRLQMSAVSQSFKDQGMKSMQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFASPWSEDPTKADPEFSVPQCYYTKQPPTLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELNNRGWFYHKELRLWLIRVPNIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLQYELLEKRPHLPQH* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0771 664 MobiDBLite consensus disorder prediction 373 396 - -
Lja3g0771 664 MobiDBLite consensus disorder prediction 370 396 - -
Lja3g0771 664 PANTHER CCR4 NOT-RELATED 2 664 IPR040168 GO:0030015
Lja3g0771 664 Gene3D - 483 664 IPR038635 -
Lja3g0771 664 MobiDBLite consensus disorder prediction 59 91 - -
Lja3g0771 664 Pfam NOT2 / NOT3 / NOT5 family 533 655 IPR007282 GO:0006355
Lja3g0771 664 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0771 Lja-Chr3 7811534 7820280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0771 K12605 - gmx:100807026 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0771 3 7811534 7820280 Lja3g0771 3 7811534 7820280 ECH
Lja3g2822 3 43249443 43258047 Lja3g0771 3 7811534 7820280 PCT