Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2821 ATGGCTGCGCCTGTAAGCACCCCTAGGAAAAAAATGACCAAACAATTGACAGGAAAAAGGGATGATACCCCTTTGCATTCTGCAGCAAGAGCAGGGAATCTGGCTGTGCTGAAGGATACCCTTACCGGTATCGAAGAGGATGAACTTCATGAGTTATTGGCCAGGCAGAATCAAGATGGAGAAACAGCGCTTTATGTGGCTGCTGAATATGGTTATGTTGATGTAGTCAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGGATCAAAGCAAGGAATGGTTTTGATGCATTTCACATTGCTGCCAAACAAGGGGATTTAGATTTACTGAAGATCCTTATGGAGGCTCATCCTGAATTGTCAATGACTGTGGACCCATCCAACACCACAGCTTTGCACACTGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTCCTTTTGGAAGCAGGAAGTAGCCTTGCAACCATTGCAAGAAGTAATGGGAAAACAGCTCTGCATTCTGCTGCGAGAAATGGGCATGTGGAGGTTGTGAAAGCGCTTCTTGAGAAGGAGCCTGGAGTTGCAACACGGACCGATAAGAAGGGCCAGACAGCGCTTCACATGGCAGTGAAGGGACAGAATCTTGAGGTGGTGGAGGAATTGATAAAAGCAGATCCCTCGACAGTAAACATGGTAGATAATAAGGGAAACACAGCATTGCATATAGCAACCAGGAAAGCCAGGACCCAGATTGCAAAGATGCTTCTCGAACATAAGGAAACAAATACAAAAGCTGTTAATAGATCTGGTGAAACTGCTGTAGACACCGCTGAGAAAATGGGGAACCAAGATGTCAAAGCCATTTTGTTGGAACACGGTGTTCAGAGTGCCAAAGCCATAAAGCCACAAGGTACTTCTACAGCCCGTGAATTGAAACAAACCGTTAGTGACATAAAGCACGAGGTCCATTACCAGTTGGAACACACGCGCCAAACCAGAAAACGTGTTCAAGGAATCGCGAAGCGCATCAACAAGATGCACACAGAAGGGCTCAACAATGCAATCAACTCCACAACTGTGGTAGCAGTCTTAATTGCCACTGTTGCCTTTGCTGCTATTTTCACAGTCCCTGGCCAATTTGTTGATGACCCAAAAAACATTCCTCCTGGGATGTCTCTTGGTGAAGCAAACATAGCCCCTCAAGCTCCGTTTATCATTTTCTTCATCTTTGATTCGATCGCGCTCTTCATTTCGCTGGCAGTGGTGGTGGTGCAGACCTCGGTCGTGGTTATTGAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATCAACAAGCTAATGTGGCTGGCTTGTGTGCTTGTTTCAGTGGCCTTCTTGGCACTGTCTTTTGTGGTGGTAGGAAAGGAAGAGAAGTGGCTGGCAATTGGAGTTACCATTATAGGGACAACCATAATGGCAACCACGTTGGGAACCATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCATTGGAAAGCAAGTCAAGGTCTTTTTCACAGCCTGCTCTTTCAGATTCAGAGCTACTTAACAATGAGTTTAAGAAAATGTATGCAATTTAG 1614 0.4542 MAAPVSTPRKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTLTGIEEDELHELLARQNQDGETALYVAAEYGYVDVVREMIQYYDLADAGIKARNGFDAFHIAAKQGDLDLLKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHVEVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLEVVEELIKADPSTVNMVDNKGNTALHIATRKARTQIAKMLLEHKETNTKAVNRSGETAVDTAEKMGNQDVKAILLEHGVQSAKAIKPQGTSTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKNIPPGMSLGEANIAPQAPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLVSVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRNIRKSSLESKSRSFSQPALSDSELLNNEFKKMYAI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2821 537 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 94 116 - -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 196 218 IPR002110 GO:0005515
Lja3g2821 537 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 537 - -
Lja3g2821 537 Pfam Ankyrin repeats (3 copies) 89 155 IPR002110 GO:0005515
Lja3g2821 537 Pfam Ankyrin repeats (3 copies) 13 82 IPR002110 GO:0005515
Lja3g2821 537 Pfam Ankyrin repeats (3 copies) 162 222 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 128 155 - -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 162 185 - -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 59 81 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 196 218 - -
Lja3g2821 537 Pfam Ankyrin repeat 231 258 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 230 253 - -
Lja3g2821 537 PANTHER ANKYRIN REPEAT PLANT PROTEIN 2 537 - -
Lja3g2821 537 SMART ANK_2a 264 294 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 162 191 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 20 51 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 196 226 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 94 123 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 59 88 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 230 260 IPR002110 GO:0005515
Lja3g2821 537 SMART ANK_2a 128 157 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 128 160 IPR002110 GO:0005515
Lja3g2821 537 Gene3D - 158 332 IPR036770 -
Lja3g2821 537 SUPERFAMILY Ankyrin repeat 24 289 IPR036770 -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 94 126 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat region circular profile. 59 81 - -
Lja3g2821 537 Gene3D - 6 157 IPR036770 -
Lja3g2821 537 Pfam Domain of unknown function 344 460 IPR026961 -
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 230 253 IPR002110 GO:0005515
Lja3g2821 537 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2821 Lja-Chr3 43243821 43248058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2821 3 537 Miscellaneous Gene Families AT1G07710 76.822 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2821 - - gmx:100779230 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2821 3 43243821 43248058 Lja3g2821 3 43243821 43248058 ECH
Lja3g0769 3 7796411 7800936 Lja3g2821 3 43243821 43248058 ECH