Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0769 ATGGATACACAAACTGTGCTGCAGCCACAAGCAAGCCCTCCAAGGAAAAAAATGGCCAAACAATTTACAGGGAAAAGGGATGATGCACCTTTACACTCTGCAGCAAGGGCAGGAAATCTGGCAGCTCTGAAGGACACACTCAGTGGTGCTGAAGAAGGGGAATTGAGAGAGTTGTTGGTAAAGCAGAACCAAGCTGGAGAAACAGCACTTTATGTTGCTGCTGAATATGGACATGTTGATATGGTGAGGGAGTTGATTAAACATTATGATCTTGCTGATGCTGGAATCAAAGCAAGAAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGATGTGCTGAGGATACTATTGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCAAACACCACGGCGTTGCACACGGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTTCTTTTGGGATCAGGAAGTAGCTTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCACTCGGCTGCGAGGAACGGGCATTTGGAGGTTGTGAAATCACTTCTGGATAAGGAGCCCGTGATCGCGACACGGACTGATAAGAAGGGGCAGACGGCGCTTCACATGGCGGTGAAGGGGCAAAGTCTTGAGGTGGTGGTGGAGCTGATAAAAGCAGACCCTTCAACAATAAACATGGTTGATAATAAGGGTAATGCGGCGTTGCATATAGCAACCAGGAAGGCCAGAGCTCAGATTATTAAGTTGATACTTGGACATTCAGAAACAAACGCCTTGGTTGTTAATAAGTCTGGTGAAACTGCATTAGACACTGCTGAGAAAACCGGGAATTCTGAAATTAAAGACATTTTGGTGGAACTTGGTGTTCAAAGTGCCAAATCTATAAAGGCAAAGCCAGCAACCGGCACAGCCCGAGAACTGAAACAAACAGTTAGTGACATAAAGCATGAAGTCCACTACCAGCTAGAACACACGCGCCAGACGCGAAAAAGCGTGCAAGGCATCGCGAAACGCCTCAACAAAATGCACGCTGAAGGGCTAAACAATGCAATCACCTCCACGACCGTGGTCGCAGTCCTCATCGCGACAGTGGCCTTCGCGGCCATCTTCGTCGTCCCGGGCCAGTTTGTTGATGATCCGAAGCAAATTCCTAAGAAGATGACGCTCGGTGAAGCGAACATAGCCCCACAGCCTGCCTTTCTCATCTTCTTCGTGTTCGATTCTATCGCGCTCTTCATTTCACTGGCCGTGGTGGTGGTTCAGACGTCGATCGTCATTATAGAAAGCAAGGCCAAGAAGCAGATGATGGCCATTATTAACAAGCTAATGTGGCTGGCTTGTGTTTCAGTTTCTGTGGCCTTCTTGGCTTTGTCCTTTATTGTGGTAGGGAAGGATCAGAGGTGGCTTGCAATTGGAGTAACAATTATAGGGACTACTATAATGGCTACAACTTTGGGCACCATGAGTTATTGGGTCATTAGGCACAGAATTGAGGCCTCAAATTTGAGGAGCATTAGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGCATCTGTTTTATCAGATTCTGAGCTACTGAACAATGTAATGTACGCGATATAG 1626 0.4668 MDTQTVLQPQASPPRKKMAKQFTGKRDDAPLHSAARAGNLAALKDTLSGAEEGELRELLVKQNQAGETALYVAAEYGHVDMVRELIKHYDLADAGIKARNGFDALHIAAKQGDLDVLRILLEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLGSGSSLATIARSNGKTALHSAARNGHLEVVKSLLDKEPVIATRTDKKGQTALHMAVKGQSLEVVVELIKADPSTINMVDNKGNAALHIATRKARAQIIKLILGHSETNALVVNKSGETALDTAEKTGNSEIKDILVELGVQSAKSIKAKPATGTARELKQTVSDIKHEVHYQLEHTRQTRKSVQGIAKRLNKMHAEGLNNAITSTTVVAVLIATVAFAAIFVVPGQFVDDPKQIPKKMTLGEANIAPQPAFLIFFVFDSIALFISLAVVVVQTSIVIIESKAKKQMMAIINKLMWLACVSVSVAFLALSFIVVGKDQRWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSASVLSDSELLNNVMYAI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0769 541 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat region circular profile. 134 161 - -
Lja3g0769 541 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 540 - -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat region circular profile. 65 88 - -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat region circular profile. 100 122 - -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat region circular profile. 168 191 - -
Lja3g0769 541 Gene3D - 124 306 IPR036770 -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat profile. 168 200 IPR002110 GO:0005515
Lja3g0769 541 PANTHER ANKYRIN REPEAT PLANT PROTEIN 9 540 - -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat profile. 202 235 IPR002110 GO:0005515
Lja3g0769 541 Pfam Domain of unknown function 351 467 IPR026961 -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat profile. 65 88 IPR002110 GO:0005515
Lja3g0769 541 Pfam Ankyrin repeats (3 copies) 28 89 IPR002110 GO:0005515
Lja3g0769 541 Pfam Ankyrin repeats (3 copies) 113 192 IPR002110 GO:0005515
Lja3g0769 541 Pfam Ankyrin repeats (3 copies) 218 295 IPR002110 GO:0005515
Lja3g0769 541 SUPERFAMILY Ankyrin repeat 30 294 IPR036770 -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat profile. 134 166 IPR002110 GO:0005515
Lja3g0769 541 Gene3D - 3 123 IPR036770 -
Lja3g0769 541 ProSiteProfiles Ankyrin repeat profile. 100 132 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 134 163 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 65 94 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 100 129 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 202 232 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 168 197 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 270 299 IPR002110 GO:0005515
Lja3g0769 541 SMART ANK_2a 236 264 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0769 Lja-Chr3 7796411 7800936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0769 11 541 Miscellaneous Gene Families AT1G07710 70.225 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0769 - - gmx:100809687 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0769 3 7796411 7800936 Lja3g0769 3 7796411 7800936 ECH
Lja3g0769 3 7796411 7800936 Lja3g2821 3 43243821 43248058 ECH