Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2820 ATGGAGTTTCTCACTCTGTTTTCTCTAGTTACTGTTCTGTACTTATGTTTCCTGATCTGGAAGCTGTTTGATCAGAGAAGGGACCAGGAGTGTTACATTCTGGACTACCAACTCTACAAGGGAAGCGATGAGAGAAAGCTTGGAACAGATTACTGTGGAAGAATCATAGAAAGGAATAAGAGCTTGGGGTTAAACGAGTACAAGTTCTTGCTCAAAGCCATTGTTAACTCTGGCATTGGGGAAGAAACTTACGCCCCAAGAAACTTCCTCGAAGGCCTCGAAGAGATGGAGGAGTTTTTCCAGGACACCATTGCCAAGCTTCTTGCAAGGTCAGGTGTTTCTTCCTCAGAGATTGATGTTCTTGTGGTGAATGTTTCAATGTTCTCTGATGTTCCTTCCTTAACCTCTCGAATCATGAACCATTACAAAATGAGGGAGGATGTTAAGGCTTTCAATCTCTCTGGAATGGGTTGCAGTGCTAGTCTAATCTCATTAGACATTGTTAAGAATATTTTCAAGTCCCACAAGAACAAGTATGCACTTTTGGTCACTTCTGAGTCTCTGAGTCCCAATTGGTACAATGGGAATGAAAGGTCTATGATTCTTGCCAATTGTTTGTTCAGAACTGGAGGTTGTGTTGTGCTTCTAACAAACAAAAGGGCATTGAAGCATAAGGCTATGTTGAAATTGAAGTGCTTGGTGAGGACTCATCATGGGGCCAGAGATGATGCTTTTAATTGTTGCCGTCAAATTGAAGATGAACAGGGCAGGCTTGGGGTTTACCTTGGAAGGAATCTTCCCAAGGCAGCTACAAGGGCTTTTGTTGATAATTTGAGGGTGTTGTCACCCAAGATTTTACCAGCAAGGGAGTTGCTAAGGTTCTTGTTTGTGTCCCTCATCAAGAAGATAACACAAATTAGTTCCCCCAAGTCTGCGGGAACTGGCAAATCCAGAGACGGACCCAGCAGATCCGGATTGAACTTCAAGTCTGGAGTGGATCATTTTTGCCTCCACACAGGAGGGAAAGCTGTGATTGATGGCATTGGGTTGAGCTTGGATCTGTGTGAGTACGATCTCGAACCAGCAAGGATGACACTGCACCGTTTTGGGAACACATCAGCTAGTAGCCTGTGGTATGTGCTAGGGTACATGGAGGCTAAGAAAAGGCTGAAGAAGGGTGATAGAGTATTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAATAGCTGTTTGTGGGAGGTAGTGAAGGATTTGGAAGGTAGAAATGTGTGGGATGATCGCATTGATGGCTACCCACCAGAGTCCTTGGCCAACCCTTTCATGAAGAAGTTTGGTTGGATCAACAATGTTGAGGATGCAACCAACTTCAAGCTTTTTGATTTCCTCAATTAA 1392 0.4382 MEFLTLFSLVTVLYLCFLIWKLFDQRRDQECYILDYQLYKGSDERKLGTDYCGRIIERNKSLGLNEYKFLLKAIVNSGIGEETYAPRNFLEGLEEMEEFFQDTIAKLLARSGVSSSEIDVLVVNVSMFSDVPSLTSRIMNHYKMREDVKAFNLSGMGCSASLISLDIVKNIFKSHKNKYALLVTSESLSPNWYNGNERSMILANCLFRTGGCVVLLTNKRALKHKAMLKLKCLVRTHHGARDDAFNCCRQIEDEQGRLGVYLGRNLPKAATRAFVDNLRVLSPKILPARELLRFLFVSLIKKITQISSPKSAGTGKSRDGPSRSGLNFKSGVDHFCLHTGGKAVIDGIGLSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVVKDLEGRNVWDDRIDGYPPESLANPFMKKFGWINNVEDATNFKLFDFLN* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2820 463 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 330 413 IPR013747 -
Lja3g2820 463 PANTHER 3-KETOACYL-COA SYNTHASE 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja3g2820 463 Pfam FAE1/Type III polyketide synthase-like protein 25 302 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lja3g2820 463 PANTHER 3-KETOACYL-COA SYNTHASE 1 453 - -
Lja3g2820 463 CDD CHS_like 12 412 - -
Lja3g2820 463 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 446 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja3g2820 463 SUPERFAMILY Thiolase-like 66 415 IPR016039 GO:0016746
Lja3g2820 463 Gene3D - 64 414 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2820 Lja-Chr3 42881935 42883990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2820 19 460 Acyl Lipid Metabolism Gene Families AT2G28630 67.325 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2820 K15397 - gmx:100776947 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2820 3 42881935 42883990 Lja3g2820 3 42881935 42883990 ECH
Lja3g0765 3 7738704 7740809 Lja3g2820 3 42881935 42883990 ECH
Lja3g2820 3 42881935 42883990 Lja3g0765 3 7738704 7740809 PCT