Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2790 ATGGCAACCAATTCTTCTAATGGGAACCACCAAACAACAACAAAGCAACCACCCTCGCCATCTCCCTTGCGCTTTTCCAAATTCTTTCAGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATCGGATCGCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCGAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTAATCCGTCACGATGTCACGGAGCCTTTGTTGATTGAGGTTGATCAGATTTACCATCTGGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTGAAGACAATAAAGACGAATGTGATCGGCACACTGAATATGCTAGGGCTTGCAAAGCGAGTAGGAGCAAGAATTTTACTTACATCAACTTCAGAGGTATATGGTGATCCTCTTTTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCGCGCATGAATATTGATGATGGGCGGGTTGTTAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTGACAGTTCAATCTCCAGGAACGCAAACGCGAAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGAAGGTTCAGATACTGGACCTATCAACCTTGGAAATCCTGGTGAATTTACAATGACTGAACTTGCCGAGACAGTGAAAGAGCTTATCAATCCAAAAGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCGGACATAACTAAAGCAAAGGAATTGTTGGGCTGGGAGCCTAAGGTCAAGTTACGGGACGGTCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGAGTTAACAAAAACATTTAA 1041 0.438 MATNSSNGNHQTTTKQPPSPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLLHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMTELAETVKELINPKVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVNKNI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2790 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Lja3g2790 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
Lja3g2790 346 Gene3D - 158 340 - -
Lja3g2790 346 Gene3D - 30 157 - -
Lja3g2790 346 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 345 - -
Lja3g2790 346 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g2790 346 CDD UGD_SDR_e 33 337 - -
Lja3g2790 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 345 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2790 Lja-Chr3 42096545 42101510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2790 30 329 Miscellaneous Gene Families AT1G02000 24.398 7.50e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2790 K08678 - gmx:100790835 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2790 3 42096545 42101510 Lja3g2790 3 42096545 42101510 ECH
Lja3g0735 3 7427335 7462127 Lja3g2790 3 42096545 42101510 ECH
Lja3g2790 3 42096545 42101510 Lja3g0735 3 7427335 7462127 PCT