Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2779 ATGGGTCAGGGTCTCAGTTGCAGAGGCAACCATGACCATGGTCTCTTCACTGCTGTGCAACAAGGTGACCTTCAAATTGTTACAGCTCTCTTGGAACAAGACCCAACTCTCTTCCACCAAACCACTCTCTATGATCGCCACTCTGCTCTTCATATTGCTGCTGCCAATGGCCAGATCGAGATTCTTTCAAGGCTTTTAGATGGATCTGTTAACCCAGATATTTTGAATCGCCAGAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGAAGGGTTGCCTGTGTGGAGAAGCTCCTTGAAGCGGGTGCTAATGTGTTGATGTTTGATACCCTAAACGGAAGAACCTGCTTACATTATGCAGCCTACTATGGCCATTCTTCTTGCCTCAAGGCAATTCTCTCTGCCGCTAAATCTAGTTCGGTGGCTGTTTCTTGGGGATTTGTTCGGTTTGTGAATATTAGAGATGGAAAGGGCGCAACGCCTTTACATTTGGCAGCTCGCCAAAGACGGCCAGAATGTGTGCATATTTTACTGGACAGTGGAGCTCTTGTTTGTGCTGCAACCGGTGGATATGGGTGTCCTGGGAGCACTCCCCTTCATCTAGCTGCTAGAGGAGGATCTCTGGATTGCATTCGTGAACTGTTGGCATGGGGTGCGGATCGTCTTCAACGCGATGCATCTGGGCGGATACCGTATATGGTTGCTCTGAAACACAAACATGGAGCAGCATGTGTGTCCTTGCTAAACCCTGCGTCGGCAGAGCCTCTTGTCTGGCCATCTCCATTGAAGTTCATTAGTGAGCTTAATCTGGAAGCCAAAGCTTTATTAGAACAGGCCCTAATGGACTCAAACAAAGAAAGGGAGAAAAACATATTGAAAGGGAGTGCTTACACTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATATCTCTGAGATTAGTGAGTCTGAATTGTGCTGCATCTGCTTTGAGCAAGTTTGCACAATTGAAGTTCAGAGCTGTGGTCACCAAATGTGTGCACAATGCACACTAGCCCTATGTTGCCACAACAAGCCTAACCCTGCCACTGCGTGTATTAACCCCCCAGTTTGTCCATTTTGCCGAAGCGCCATAGCGAGACTGGTGGTTGTGAAGGTAGAAAGCGCTTATTATGATGAAGGTGATCAAGATAATAACGTTGATATGATGAATTGTTCCAAGATTAGCAAGTCAAGGAAACCGAGAAACATGAATGACTGTGGTGGTAGTAGCAGCTTCAAGGGATTAACATTCGGGAAATTGGGCGGCCGAAGCTCTGGAAGGATTGCTGCAGAGTGGGTGGATAAATTAGAGTGA 1341 0.4713 MGQGLSCRGNHDHGLFTAVQQGDLQIVTALLEQDPTLFHQTTLYDRHSALHIAAANGQIEILSRLLDGSVNPDILNRQKQTPLMLAAMHGRVACVEKLLEAGANVLMFDTLNGRTCLHYAAYYGHSSCLKAILSAAKSSSVAVSWGFVRFVNIRDGKGATPLHLAARQRRPECVHILLDSGALVCAATGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGAACVSLLNPASAEPLVWPSPLKFISELNLEAKALLEQALMDSNKEREKNILKGSAYTLPSPSHSDGVDDNISEISESELCCICFEQVCTIEVQSCGHQMCAQCTLALCCHNKPNPATACINPPVCPFCRSAIARLVVVKVESAYYDEGDQDNNVDMMNCSKISKSRKPRNMNDCGGSSSFKGLTFGKLGGRSSGRIAAEWVDKLE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2779 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lja3g2779 446 Gene3D - 9 146 IPR036770 -
Lja3g2779 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lja3g2779 446 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Lja3g2779 446 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lja3g2779 446 SUPERFAMILY Ankyrin repeat 14 244 IPR036770 -
Lja3g2779 446 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Lja3g2779 446 Gene3D - 147 256 IPR036770 -
Lja3g2779 446 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lja3g2779 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 386 IPR013083 -
Lja3g2779 446 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Lja3g2779 446 SMART ANK_2a 194 223 IPR002110 GO:0005515
Lja3g2779 446 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lja3g2779 446 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lja3g2779 446 SMART ANK_2a 112 143 IPR002110 GO:0005515
Lja3g2779 446 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lja3g2779 446 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lja3g2779 446 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Lja3g2779 446 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lja3g2779 446 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Lja3g2779 446 Pfam Ankyrin repeats (many copies) 194 234 IPR002110 GO:0005515
Lja3g2779 446 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Lja3g2779 446 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Lja3g2779 446 SUPERFAMILY RING/U-box 316 374 - -
Lja3g2779 446 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2779 Lja-Chr3 41688780 41692452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2779 77 237 Miscellaneous Gene Families AT5G02620 25.654 7.32e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2779 - - gmx:100786708 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2779 3 41688780 41692452 Lja3g2779 3 41688780 41692452 ECH
Lja3g2779 3 41688780 41692452 Lja3g0722 3 7294508 7298084 PCT