Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0722 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAACATGGACTCTTCCGTGCTGTTCAGCATGGGGACCTTCAAACTGTTTCCACTCTTTTACAGACACATCCAGCTCTCATGCATCGAACCACTGTCTATGACCACCACTCTGCTCTTCATATTGCCGCTGCCAATGGCCAGATCCAGGTTCTATCTAGGCTTTTAGATGGATCTGCGAATCCTGATGTGTTGAATCGCCAAAAGCAGACCCCGCTTATGTTGGCTGCAATGCACGGAAAAATTGCTTGTGTGGAGAAGCTTCTTGAAGCTGGGGCTAATGTATTAATGTTTGATGCTGGTTATGGAAGAACCTGTTTGCACTATTCAGCCTACTATGGTCATTCTTCATGCCTTAAGGCAATTCTTTCTGCAGCTCAATCTAGTCCAGTGGCAGCTTCTTGGGGGTTTGCTCGGTTTGTGAATGTTAGAGATGCTAGGGGTGCTACCCCATTGCACTTGGCGGCTCGTCAAAGACGGCCTGAATGTGTGCATATTCTATTGTGCAATGGAGCTCTTGTTGGTGCCTCAACTGGCAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCCAAAGGAGGGTCTCTGGATTGCATCCGCGAACTATTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCCGGGCGGATACCATATGTAGTTGCTCTGAAGCACAGACATAGTGCATGTGCAGCATTGTTAAATCTTACAGCTGCACAGCCTCTTGTCTGGCCATCATCTTTGAAGATCATCAGTGACCTCAATCCAGATGCCAAAGTTTTACTAGAGCGAGCCTTGATGGACGCGAACAGGGAAAGGGAGAAAAAGATATTCAAAGAGAGTGCTTACTCTCTTCCATCTCCATCGCACTCTGATCAGATAGATGACAATATCTCTGAGGTTAGTGAGACTGAACTATGCTGCATTTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGAATGTGGCCACCAAATGTGTGCAAAATGCACACTAGCCCTCTGTTGCCACAACAAGCCTAACCCTTCTACTTCTTGTCCTATCCCACCGATTTGTCCGTTCTGCCGAAGCACCATAGCTAGACTGGTGGTTATCAAGATAGAAAGTCATGATGACATTGATCAAGATGGTTGTGTTGATATCTCTTGTTCCAATCCAAGCAAGTCATGGAAGTTCCGGAACTTGAACGAGGGTGGTAGCAGCAGTTTCAAGGGACTATCATCCAGTGTAAATTCATTTGGAAAGATGGGTTGCCGCAGTTCAGGAAGGGTTGAAGTTGAAGATGAGTGGGTTGATAATAAGCCACAATGA 1350 0.4696 MGQGLSCRGSHEHGLFRAVQHGDLQTVSTLLQTHPALMHRTTVYDHHSALHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDAGYGRTCLHYSAYYGHSSCLKAILSAAQSSPVAASWGFARFVNVRDARGATPLHLAARQRRPECVHILLCNGALVGASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHSACAALLNLTAAQPLVWPSSLKIISDLNPDAKVLLERALMDANREREKKIFKESAYSLPSPSHSDQIDDNISEVSETELCCICFEQVCTIEVQECGHQMCAKCTLALCCHNKPNPSTSCPIPPICPFCRSTIARLVVIKIESHDDIDQDGCVDISCSNPSKSWKFRNLNEGGSSSFKGLSSSVNSFGKMGCRSSGRVEVEDEWVDNKPQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0722 449 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lja3g0722 449 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 446 - -
Lja3g0722 449 Gene3D - 198 252 IPR036770 -
Lja3g0722 449 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lja3g0722 449 Pfam Ankyrin repeat 158 182 IPR002110 GO:0005515
Lja3g0722 449 Pfam Ankyrin repeat 112 134 IPR002110 GO:0005515
Lja3g0722 449 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Lja3g0722 449 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lja3g0722 449 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Lja3g0722 449 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lja3g0722 449 Gene3D - 148 197 IPR036770 -
Lja3g0722 449 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Lja3g0722 449 Gene3D - 9 145 IPR036770 -
Lja3g0722 449 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Lja3g0722 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 387 IPR013083 -
Lja3g0722 449 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Lja3g0722 449 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lja3g0722 449 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lja3g0722 449 SUPERFAMILY RING/U-box 313 373 - -
Lja3g0722 449 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lja3g0722 449 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lja3g0722 449 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lja3g0722 449 SMART ANK_2a 112 142 IPR002110 GO:0005515
Lja3g0722 449 SMART ANK_2a 194 223 IPR002110 GO:0005515
Lja3g0722 449 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lja3g0722 449 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Lja3g0722 449 PANTHER HOMEOBOX PROTEIN WARIAI 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0722 Lja-Chr3 7294508 7298084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0722 50 247 Miscellaneous Gene Families AT5G02620 28.155 4.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0722 - - gmx:100800611 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0722 3 7294508 7298084 Lja3g0722 3 7294508 7298084 ECH
Lja3g2779 3 41688780 41692452 Lja3g0722 3 7294508 7298084 PCT