Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2747 ATGTCTCTGTCAGAACGCACATACAAACATGTTAATACTTCAAGAAGTCCCACCACCGTTAATGTGGAACAATACCTTCGAGGAAGAGGGAAATCCTCTAGGATGTCACCAACCTATTCTCCGACCTCCTCTTCCCCCTCCTCCCCTTACTTTGAGAGGGTGAAGCACCATGACCCTGAAGATGACCATGGCCTCTATCAGAAGAAATCAGTTCTCGCCAAAGTGAAGGAGAAGGCAAGGAGATTGCGCACTAGCCTCAGCGGCAAGAGAAGACAGGAGGACGGGAATCTCACTCCTTCTTGGGGTGTTAGCTTAGAAGACGTGGAGGAGGAAGAAGAAGATGCTGAATACCTTGGAGCTCCAATCTACGAATCGGAGCTGGCACCTGAGGACTACAAAGAAAATGCAAGACAACATCCAAGAGCAAATCCAGTCATCTCCGAGAAGCGTGTTTTGCGGAATGCTATCAAATCAGGAATGGAACAAGATCGAGACATGCTGAATAGTCCTGCTACATCTTCAACAACACCACAACCTGCAACAACTACTACTCATGGTGGTTCAAACATGACAATGACTGAAAAAATAGCAGAGAAATTGACACCAGCTTTTGCTAAAGGGCCAGATGTAGCTCATTCCACATCCTCTAATGCTGTTTCCAGAACTCCTTCTGCGAATTTGTCATCCCAAGCTTCTTCAGGTTCTCCACTGGCTTCATCAGTTTCCTCGCCAACACAAAATTCATCATCCTCAGTTGTTCTACTTGGTGGAAGGAATACAGGCTCTGAGGGTGAGCCGATGAAAGATTATTTGATGAATAAGTTTGAGTCAAGGAACTATGAAGAAACTCATTCTCAGGTGACACCTGAAACAGTAAGTCATAGGAGAGGTTCTAGTAATGCAGGTGTGATGGACAAGGTTAAGGGAGCTGTAAATTCTCTTCTCCGCTATGAGGATTCATCGCCAACAGACTATTCATCGGCAACACAAAATTTACCATTCTCATTACATAGTGGGAATAATGCAAGCCCCTCTGTCAAAAACTATGTGGTGAATGAGTCTGAGGCAGGGAATGATGAAAAAACTCGGTCTCAGGTTACATCTGAAACAATGAGTCGTAGGAAAGGTTCTATTATTAATGAAGGTGTGATGGAGAAGTTTAAAGGAGCTGTGAATTCTCTTCTCCGGAACGAGGAACCTTCACAACAGTATGCAGTCAAAACTCCTGCTACAAGCTCTATAACCAACAATCAAGAAGTTGCCCAGGAAGAGAACCGTGGGAGAATTCTTCAAGCAAATTAA 1302 0.4439 MSLSERTYKHVNTSRSPTTVNVEQYLRGRGKSSRMSPTYSPTSSSPSSPYFERVKHHDPEDDHGLYQKKSVLAKVKEKARRLRTSLSGKRRQEDGNLTPSWGVSLEDVEEEEEDAEYLGAPIYESELAPEDYKENARQHPRANPVISEKRVLRNAIKSGMEQDRDMLNSPATSSTTPQPATTTTHGGSNMTMTEKIAEKLTPAFAKGPDVAHSTSSNAVSRTPSANLSSQASSGSPLASSVSSPTQNSSSSVVLLGGRNTGSEGEPMKDYLMNKFESRNYEETHSQVTPETVSHRRGSSNAGVMDKVKGAVNSLLRYEDSSPTDYSSATQNLPFSLHSGNNASPSVKNYVVNESEAGNDEKTRSQVTSETMSRRKGSIINEGVMEKFKGAVNSLLRNEEPSQQYAVKTPATSSITNNQEVAQEENRGRILQAN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2747 433 MobiDBLite consensus disorder prediction 398 424 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 280 305 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 354 368 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 165 189 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 353 374 - -
Lja3g2747 433 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 341 433 IPR037491 GO:0009737
Lja3g2747 433 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 22 253 IPR037491 GO:0009737
Lja3g2747 433 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 267 321 IPR037491 GO:0009737
Lja3g2747 433 Coils Coil 72 92 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 131 189 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 1 50 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 284 298 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 206 268 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 1 63 - -
Lja3g2747 433 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 267 321 - -
Lja3g2747 433 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 22 253 - -
Lja3g2747 433 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 341 433 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 210 257 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 131 146 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 398 433 - -
Lja3g2747 433 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2747 Lja-Chr3 40446938 40449096 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2747 - - lja:Lj3g3v1680390.1 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2747 3 40446938 40449096 Lja3g0688 3 6835308 6837270 PCT