Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0688 ATGGCTCAGCTCGAACGCCCCCAGAGGCAAGTTGATGCCTCTTTAAAAACTCCAACCATTAATACCATGGAACAGCTCCTCAGAGGAGAAGGTTCACACTCAGCTCCAAACTCAAAGTCTAAGCTGTCACCAACCTGCTCCCCCTCCTCCTCCGCCACTTCCTCCTCGCCATCCTCCCCTTTCTTCAGCAGGTTGAGGCACCGTGATACAGAAGAAGACAATAGCCAGAATCAGAAAAAATCAGTCCTCACCAAAGTGAAGGAGAAGGCCAAGAAACTACGCCACAGCCTCAGCAAGAAAAAACAAGAGGATGGGAACGCTAATAGCCCCACATCAGGTGCTATCTTAGAAGGTGATGGTGCAGAAGAAGATGCTGAATACCGTGGAGCCCCAGTGTATGAATCAGAGAAGGCACCTGCAGGATACAAGGAAAATGGTACACTCCATTCAAGAGCTACCTCTGCAGTCCCTGAGAAGCATGTTATGTCAAACTATGACAAACAAAATCGAGAAAAGTCACTAGGTCATTCCCAGTCCATGAGAACAACACAACCTAAAACAACAACTTCAAAGGCTGCTGCTGCTACTACTACACTTCCGGATCGAAACAAGACAACGGCAAAAAACGTAGCTGAGAAACTGAAACCAGCTCATTTTGAAGGATCAGATGCAGCTAAGGCTTTAACATCCAAACTTCAAGACCTTACTGTTTCCAAATCTGCAGAACATCACACTTCATCTTCACTAACTGCTGCACCTCTAATAACTCATCACTTTTCTTCGTCAATTGGTACTGCTGCTCCGCGTACCCCTCCTGCAAAGTTGCCCTCCCAAACTTCTTCAATTTCAACTCGAACTTCATCGCCTTCGGCAGCTGCAGCTGCACCACCTCCATCCCCCTCGTCTGCTCCGCCAATCGGAAAGAGCACCAGTCCCACCAGCTCGCAATTATGGGACAAGGGTGTTTCCATGAAAGAGTATTTTTTGAACAAGTTTGAGCCAGGGGAAGATGACAAGGCTCTGTCTAAGGTGATATCTGAAGCAATGAGTCCTAAGAGAACTCCTGGTGATGCAGGTGTGATGGAGAAGGTTAGAGAAGCTGTTACTTCTTTGCTCCGAAATGAGCAACCAAACAAGTATGTAGACGCAAACACGACAATTACCAGTTCATCTCAAACCCCAGCATCTTCCACTGCAACTCGAGCTTCATCTCAACTTCCAGTATCTTCCAATGCTCAAGAAGTGGCTCAGGAAGAAAACCATGGCAGAATTCTTCAGGCAAATTGA 1287 0.4693 MAQLERPQRQVDASLKTPTINTMEQLLRGEGSHSAPNSKSKLSPTCSPSSSATSSSPSSPFFSRLRHRDTEEDNSQNQKKSVLTKVKEKAKKLRHSLSKKKQEDGNANSPTSGAILEGDGAEEDAEYRGAPVYESEKAPAGYKENGTLHSRATSAVPEKHVMSNYDKQNREKSLGHSQSMRTTQPKTTTSKAAAATTTLPDRNKTTAKNVAEKLKPAHFEGSDAAKALTSKLQDLTVSKSAEHHTSSSLTAAPLITHHFSSSIGTAAPRTPPAKLPSQTSSISTRTSSPSAAAAAPPPSPSSAPPIGKSTSPTSSQLWDKGVSMKEYFLNKFEPGEDDKALSKVISEAMSPKRTPGDAGVMEKVREAVTSLLRNEQPNKYVDANTTITSSSQTPASSTATRASSQLPVSSNAQEVAQEENHGRILQAN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0688 428 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 48 428 IPR037491 GO:0009737
Lja3g0688 428 Coils Coil 83 103 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 175 205 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 10 63 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 1 222 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 206 220 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 384 417 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 384 428 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 260 292 - -
Lja3g0688 428 PANTHER LOW-TEMPERATURE-INDUCED PROTEIN 48 428 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 64 84 - -
Lja3g0688 428 MobiDBLite consensus disorder prediction 260 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0688 Lja-Chr3 6835308 6837270 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0688 - - aprc:113859169 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2747 3 40446938 40449096 Lja3g0688 3 6835308 6837270 PCT