Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2708 ATGGGTGGCGTTTGGTTTATACAAGCAGTGCTATTACTGGCGGTCACCACCGCAGTACAGTCATGTCCGCCGGCGGAGAGGGCGGCGCTGCTGCAGTTCAAGGCAGCCCTCCACGAAACTAAGTTTGATATCTTCAAGACATGGACCGGCGCCGACTGCTGCAACAAGTGGTACGGCATCAGCTGCGACAGAGGGACCCACCGCGTCGCCGACATCAACCTCCGCGGCGAGTCGGAGGAGAAGATGTTCGAGAAGGCAAACCAAACCGGCTACATGACTGGCCGGATCTCCCCGGCAATCTGCAAGCTCCACCGCCTCTCCAGCCTCACAATCGCCGATTGGAAGGGAATCTCCGGCGAGATCCCCGGCTGCATAACCTCACTCCCCTTCCTCCGGATCGTCGACCTTGTCGGTAACCGCATCATCGGTAAAATCCCCTCCGACATCGGCCGGCTCCACCGCCTCACCGTCCTCAACGTCGCCGACAACGGCATCTCCGGTGCAATCCCAGCCTCCCTTACCGGCCTCCGGAGCCTCATGCACCTCGACCTCCGCAACAACCGTCTCTCCGGGCCCATCCCACGTGACTTTGGATCACTCCGAATGCTGAGTCGGGCCTTGCTGAGCGGTAACTCAATTAGCGGGCCTATCCCGAGCTCAATTTCTCGTATTTACCGTCTTGCGGACTTAGATCTATCTCGTAACCAAGTATCTGGGCCGATACCCGAATCGCTCGGTAAAATGGCGGTTCTTTCTACCCTCAATTTGGACATGAACAGGCTTTCCGGACACATTCCGAAAAGTTTGTTCGTGTCTGGCATAAGTGATTTAAATATCAGTCACAATGCGTTGGAAGGTGCTATCCCCGACGCGTTTGGTGAAAGGTCTTATTTCACGGCTTTGGATTTGTCTTATAACAATCTCAAAGGGGCAATCCCAAAATCTATATCCTCTGCTGCGTATATTGGACACTTGGATTTGAGTCACAACCATCTTTGTGGTGCCATTCCAATTGGATCTCCGTTTGATCATTTGGAAGCTTCGTCCTTTGTTTACAACGATTGCCTCTGTGGGAAGCCACTCAAAGCTTGCTAA 1095 0.5397 MGGVWFIQAVLLLAVTTAVQSCPPAERAALLQFKAALHETKFDIFKTWTGADCCNKWYGISCDRGTHRVADINLRGESEEKMFEKANQTGYMTGRISPAICKLHRLSSLTIADWKGISGEIPGCITSLPFLRIVDLVGNRIIGKIPSDIGRLHRLTVLNVADNGISGAIPASLTGLRSLMHLDLRNNRLSGPIPRDFGSLRMLSRALLSGNSISGPIPSSISRIYRLADLDLSRNQVSGPIPESLGKMAVLSTLNLDMNRLSGHIPKSLFVSGISDLNISHNALEGAIPDAFGERSYFTALDLSYNNLKGAIPKSISSAAYIGHLDLSHNHLCGAIPIGSPFDHLEASSFVYNDCLCGKPLKAC* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2708 364 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 5 364 - -
Lja3g2708 364 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 5 364 - -
Lja3g2708 364 Pfam Leucine rich repeat 275 332 IPR001611 GO:0005515
Lja3g2708 364 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Lja3g2708 364 SUPERFAMILY L domain-like 21 362 - -
Lja3g2708 364 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lja3g2708 364 Gene3D Ribonuclease Inhibitor 19 88 IPR032675 -
Lja3g2708 364 Gene3D Ribonuclease Inhibitor 89 364 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2708 Lja-Chr3 39307774 39309207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2708 92 364 Receptor kinase-like Gene Family AT5G46330 37.276 3.21e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2708 - - gmx:100804739 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2708 3 39307774 39309207 Lja3g2708 3 39307774 39309207 ECH
Lja3g0634 3 6351306 6356500 Lja3g2708 3 39307774 39309207 ECH
Lja3g2708 3 39307774 39309207 Lja3g0634 3 6351306 6356500 PCT