Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2665 ATGGCACTCAACACGTTCTTGGTTTTCCTGCTTCCCCTCCTCAGTCTTCTTGTTTGCACATTACCATCAATTACTTTTGCAGAAGATGTTTCTCCCATTGCTGACGTTGTTTCACTTAATCGCAGCAGTTTTCCGAAAGGCTTCATTTTTGGGACAGCATCCTCGGCATACCAGTATGAAGGTGCGGCAAATAAAGGTGGTAGAAAACCAAGTATATGGGACACCTACGCCCACAATCATTCAGATCGCATAGCAGATGGAAGCAATGGAGATGTTGCAATAGATGAATATCACCGCTACAAGGAAGATGTTGGGATCATGAAGTCTATGAATTTGGATGCGTACAGATTTTCTATCTCTTGGCCTAGAATCCTTCCAAAAGGAAAGCTCAGTGGAGGTATAAACCAAGAAGGAATAAAATATTACAACAATCTCATCAACGAGCTGCTAGCTAAAGGTCTACAACCATTTGTTACACTTTTTCATTGGGATATGCCCCAACCTTTGGAAGATGAGTATGGTGGGTTCTTAAAGGAGAACATTGTAGCTGATTACAAAGATTATGCGGAGCTTTGTTTCAAGGAATTTGGAGATAGAGTGAAGCATTGGATTACTTTGAATGAACCATGGGGTTTCAGTAGCAATGGCTATGCACTTGGGGAATTTGCACCAGGTCGATGTTCTAAATGGTTGGATCCAAATTGCACCGGTGGTGATTCAGGGACAGAGCCATATTTGGTTACACACTACCAACTTCTTGCTCATGCGGAAGCTGTTCATGTGTACAAGAAGAAATATCAGGCATCTCAAAAGGGGATCATAGGAGTAACATTGGTGACTCATTGGTTTGAACCGTTTTCAGATAACAAATATGATCATCACGCTGCTGGACGAGCAATTGACTTCATGTTTGGATGGTATATGGATCCACTGACGTTTGGAAAATATCCAGACAGTATGATTTCTCTAGTTGGAAACAGATTGCCAAAGTTTACTTCGAGGCAAGCGAGGCTAGTTAAAGGTTCATTTGATTTTATTGGAATAAACTATTACACCACTTATTATGCTGCCAACGCACCTCCTGGAATCCATCCCTATTTCTTCACAGACTCTCTTGCCAATCTTACAGGTGAGCGTAACGGGAATCCCATAGGTCCAAGGGCTGCATCGACTTGGTTATATATTTATCCAAAAGGAATTCAAGAATTGTTGCTCTATACCAAGAAAAAGTACAACAACCCTCTGATTTACATTACTGAAAATGGTATGAGTGAGTTCAATGATCCAACACTATCACTAGAGGAAGCTCTTATAGACACTTTTAGAATCGACTATTATTTTCGGCATCTCTTTTATCTTCGATCTGCAATAAGGAATGGGTCAAACGTCAAAGGATATTTCGCATGGTCATTGCTGGACAATTATGAATGGTCTTCAGGTTATACAGTGCGATTTGGAATGAATTTTGTGGATTACAAAAATGGATTGAAGAGGTACAAAAAGCTATCAGCAAAATGGTTCACAAACTTTCTTAAAAGATATTAG 1545 0.4013 MALNTFLVFLLPLLSLLVCTLPSITFAEDVSPIADVVSLNRSSFPKGFIFGTASSAYQYEGAANKGGRKPSIWDTYAHNHSDRIADGSNGDVAIDEYHRYKEDVGIMKSMNLDAYRFSISWPRILPKGKLSGGINQEGIKYYNNLINELLAKGLQPFVTLFHWDMPQPLEDEYGGFLKENIVADYKDYAELCFKEFGDRVKHWITLNEPWGFSSNGYALGEFAPGRCSKWLDPNCTGGDSGTEPYLVTHYQLLAHAEAVHVYKKKYQASQKGIIGVTLVTHWFEPFSDNKYDHHAAGRAIDFMFGWYMDPLTFGKYPDSMISLVGNRLPKFTSRQARLVKGSFDFIGINYYTTYYAANAPPGIHPYFFTDSLANLTGERNGNPIGPRAASTWLYIYPKGIQELLLYTKKKYNNPLIYITENGMSEFNDPTLSLEEALIDTFRIDYYFRHLFYLRSAIRNGSNVKGYFAWSLLDNYEWSSGYTVRFGMNFVDYKNGLKRYKKLSAKWFTNFLKRY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2665 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 9 513 - -
Lja3g2665 514 ProSitePatterns Glycosyl hydrolases family 1 active site. 416 424 IPR018120 -
Lja3g2665 514 SUPERFAMILY (Trans)glycosidases 33 512 IPR017853 -
Lja3g2665 514 Pfam Glycosyl hydrolase family 1 42 512 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 PRINTS Glycosyl hydrolase family 1 signature 342 356 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 Gene3D Glycosidases 29 513 - -
Lja3g2665 514 PANTHER GLYCOSYL HYDROLASE 9 513 IPR001360 GO:0004553|GO:0005975
Lja3g2665 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2665 Lja-Chr3 37305397 37313174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2665 5 511 Glycoside Hydrolase AT5G44640 54.813 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2665 - K01188 gmx:100812431 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2665 3 37305397 37313174 Lja3g2665 3 37305397 37313174 ECH
Lja3g0617 3 6102727 6106926 Lja3g2665 3 37305397 37313174 ECH