Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0617 ATGTTGAACGTGCTTTTCTGCCTTTTCTCTCTTCTTGTTACCTCATCCGCTCACGTTGTTGCTCCCATTCTTGACGTTTCGTATCTCAATCGGAGCAGTTTCCCGCCAGGTTTCGTTTTCGGAACAGCTTCTGCAGCATACCAGCATGAAGGTGGTGCCAGGGAAGGTGGAAAAGGACCCAGTGTATGGGATACTTTCACTCATAAATATCCAGAAAAAATACGAGATGGAGGTAATGGAGATGTAACATGCGACCAATATCATCGGTATAAGGAGGATGTTGGAATCATGAAGGATATGAATTTGGATGCTTATAGATTCTCCATTGCTTGGACTAGAGTATTACCAGGAAAGCTTAGTGGAGGTGTGAATCGTGAGGGAGTAAACTATTATAACAACCTCATCGATGAGCTACTGACTAATGGTATGGAACCATATGTAACCCTTTACCATTGGGACATACCTCAAGCCCTAGAAGATGAGTATGGCAGTTTATTAAGCCCTCGCATTGTAGATGACTTTAGGGACTATGCTGAACTTTGTTTCAAGGAATTTGGTGATAGGGTGAAATATTGGATTACTTTGAATGAACCAAGTAGTGTGAGTAAGAATGCCTATGGAAATGGAAGGTTTGCACCAGGTCGGTGTTCTGCTTGGCTAAAGCTGAACTGCACTGGTGGCGATTCGGGGACAGAGCCATATTTGACTTCGCATCACATGCTTCTTGCTCATGCTGCTGCTGTCAATGTGTACAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGGTTACCATAAATACTGAATGGTTTGTGCCCGCAACTCAAGAGAAATCAGATGTTGATGCTGCACGACGTGCCCTTGACTTCATGTTTGGATGGTATATGGATCCTCTCACAAAAGGTAAATATCCAAAAAGTATGCAATCTCATGTGGGAGAAAGACTACCAAAGTTCACCCAAGAAGAACCCGAGCTAGTTAAGGGGTCGTTTGATTTTCTGGGCCTAAACTATTACTCATCCTTTTATATTGCCAATGCACCTCACCTACATGGCGCGGGACCAGCCCAAAAATTTGATGCTCGTGTTAATAGAACAAATCAAGTAAATGGCAAGGCCATTGGTCCCATGGCTGCTTCGGACTGGTTATCCATTTATCCGCGAGGATTTCACGAACTGTTGCTTTTCATCAAGAAAGAGTACAACAATCCTGTAATTTACATTACTGAAAATGGTTATGATGAGTACAACGATCCAACACTATCAATTGAAGAATCCCTCTTGGATACTTACAGAGTTGATTATCTTTATCGTCATCTTTACTATGCTCATAAAGCAATCAAGGATGGTGTGAATGTAAAGGGATATTTTGTGTGGTCACTGTTGGATAATATGGAATGGGACTCGGGCTACACTGTGCGATTTGGACTCAACTTTGTGGATTTCAAAGGTGGCTTAAAAAGATACCCAAAAATCTCAGCGCATTGGTTTAAGAATTTCCTCAATAAAAATTAG 1518 0.419 MLNVLFCLFSLLVTSSAHVVAPILDVSYLNRSSFPPGFVFGTASAAYQHEGGAREGGKGPSVWDTFTHKYPEKIRDGGNGDVTCDQYHRYKEDVGIMKDMNLDAYRFSIAWTRVLPGKLSGGVNREGVNYYNNLIDELLTNGMEPYVTLYHWDIPQALEDEYGSLLSPRIVDDFRDYAELCFKEFGDRVKYWITLNEPSSVSKNAYGNGRFAPGRCSAWLKLNCTGGDSGTEPYLTSHHMLLAHAAAVNVYKTKYQASQKGLIGVTINTEWFVPATQEKSDVDAARRALDFMFGWYMDPLTKGKYPKSMQSHVGERLPKFTQEEPELVKGSFDFLGLNYYSSFYIANAPHLHGAGPAQKFDARVNRTNQVNGKAIGPMAASDWLSIYPRGFHELLLFIKKEYNNPVIYITENGYDEYNDPTLSIEESLLDTYRVDYLYRHLYYAHKAIKDGVNVKGYFVWSLLDNMEWDSGYTVRFGLNFVDFKGGLKRYPKISAHWFKNFLNKN* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0617 505 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 23 504 - -
Lja3g0617 505 PANTHER GLYCOSYL HYDROLASE 23 504 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 Gene3D Glycosidases 14 504 - -
Lja3g0617 505 PRINTS Glycosyl hydrolase family 1 signature 430 441 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 PRINTS Glycosyl hydrolase family 1 signature 331 345 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 PRINTS Glycosyl hydrolase family 1 signature 407 415 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 PRINTS Glycosyl hydrolase family 1 signature 475 487 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 PRINTS Glycosyl hydrolase family 1 signature 451 468 IPR001360 GO:0004553|GO:0005975
Lja3g0617 505 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 38 52 IPR033132 -
Lja3g0617 505 SUPERFAMILY (Trans)glycosidases 20 503 IPR017853 -
Lja3g0617 505 Pfam Glycosyl hydrolase family 1 32 505 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0617 Lja-Chr3 6102727 6106926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0617 1 504 Glycoside Hydrolase AT5G44640 50.198 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0617 - K01188 gmx:100801874 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0617 3 6102727 6106926 Lja3g0617 3 6102727 6106926 ECH
Lja3g0617 3 6102727 6106926 Lja3g2665 3 37305397 37313174 ECH